Literature DB >> 34655019

How long does the mRNA remains stable in untreated whole bovine blood?

Rodrigo Giglioti1, Bianca Tainá Azevedo1, Henrique Nunes de Oliveira2, Luciana Morita Katiki1, Anibal Eugênio Vercesi Filho1, Márcia Cristina de Sena Oliveira3, Cintia Hiromi Okino4.   

Abstract

BACKGROUND: High quality and quantity of messenger RNA (mRNA) are required for accuracy of gene expression studies and other RNA-based downstream applications. Since RNA is considered a labile macromolecular prone to degradation, which may result in falsely altered gene expression patterns, several commercial stabilizing reagents have been developed aiming to keep RNA stable for long period. However, for studies involving large number of experimental samples, the high costs related to these specific reagents may constitute a barrier. METHODS AND
RESULTS: In this context the present study was designed aiming to evaluate the stability of mRNA in whole bovine blood collected in EDTA tubes during storage at common fridge (4 °C). Whole blood samples were collected from six Holstein calves and submitted to RNA extraction in each different interval: immediately after blood sampling (< 2 h), at 1-day post-sampling (dps), 2 dps, 3 dps, 7 dps and 14dps intervals. RNA integrity and purity were evaluated, and RT-qPCR assays were run using seven different genes (B2M, ACTB, PPIA, GAPDH, YWHAZ, CD4 and IFN-γ) aiming to evaluate the presence of altered gene transcription during storage. All extracted RNA samples presented high purity, while optimal integrity and unaltered gene expression were observed in whole experimental group up to 3 days of storage.
CONCLUSION: Bovine blood RNA remained stable in K3EDTA tubes for 3 days stored at common fridge and can be successfully and accurately used for gene expression studies.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Cattle; Fridge; Gene expression; RNA integrity; Stability; Storage

Mesh:

Substances:

Year:  2021        PMID: 34655019     DOI: 10.1007/s11033-021-06808-w

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  16 in total

1.  Effects of globin mRNA reduction methods on gene expression profiles from whole blood.

Authors:  Jinny Liu; Elizabeth Walter; David Stenger; Dzung Thach
Journal:  J Mol Diagn       Date:  2006-11       Impact factor: 5.568

2.  Characterization of globin RNA interference in gene expression profiling of whole-blood samples.

Authors:  Christopher Wright; Donald Bergstrom; Hongyue Dai; Matthew Marton; Mark Morris; George Tokiwa; Yanqun Wang; Thomas Fare
Journal:  Clin Chem       Date:  2007-12-18       Impact factor: 8.327

3.  Validation of extraction methods for total RNA and miRNA from bovine blood prior to quantitative gene expression analyses.

Authors:  Andrea Hammerle-Fickinger; Irmgard Riedmaier; Christiane Becker; Heinrich H D Meyer; Michael W Pfaffl; Susanne E Ulbrich
Journal:  Biotechnol Lett       Date:  2009-09-30       Impact factor: 2.461

4.  Evaluation of reference genes for qRT-PCR gene expression studies in whole blood samples from healthy and leukemia-virus infected cattle.

Authors:  P Brym; A Ruść; S Kamiński
Journal:  Vet Immunol Immunopathol       Date:  2013-03-13       Impact factor: 2.046

5.  RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus).

Authors:  Carolina N Correia; Kirsten E McLoughlin; Nicolas C Nalpas; David A Magee; John A Browne; Kevin Rue-Albrecht; Stephen V Gordon; David E MacHugh
Journal:  Front Genet       Date:  2018-08-14       Impact factor: 4.599

6.  Gene expression profiling of whole blood: A comparative assessment of RNA-stabilizing collection methods.

Authors:  Duncan E Donohue; Aarti Gautam; Stacy-Ann Miller; Seshamalini Srinivasan; Duna Abu-Amara; Ross Campbell; Charles R Marmar; Rasha Hammamieh; Marti Jett
Journal:  PLoS One       Date:  2019-10-10       Impact factor: 3.240

7.  Investigating gene expression profiles of whole blood and peripheral blood mononuclear cells using multiple collection and processing methods.

Authors:  Aarti Gautam; Duncan Donohue; Allison Hoke; Stacy Ann Miller; Seshamalini Srinivasan; Bintu Sowe; Leanne Detwiler; Jesse Lynch; Michael Levangie; Rasha Hammamieh; Marti Jett
Journal:  PLoS One       Date:  2019-12-06       Impact factor: 3.240

8.  Stabilization of cellular RNA in blood during storage at room temperature: a comparison of cell-free RNA BCT(®) with K3EDTA tubes.

Authors:  Kausik Das; Sheila E Norton; Jodi R Alt; Gary D Krzyzanowski; Thomas L Williams; M Rohan Fernando
Journal:  Mol Diagn Ther       Date:  2014-12       Impact factor: 4.074

9.  Comparison of procedures for RNA-extraction from peripheral blood mononuclear cells.

Authors:  Antonio Rodríguez; Hans Duyvejonck; Jonas D Van Belleghem; Tessa Gryp; Leen Van Simaey; Stefan Vermeulen; Els Van Mechelen; Mario Vaneechoutte
Journal:  PLoS One       Date:  2020-02-21       Impact factor: 3.240

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