Literature DB >> 34650131

A trajectory-based loss function to learn missing terms in bifurcating dynamical systems.

Rahel Vortmeyer-Kley1, Pascal Nieters2, Gordon Pipa2.   

Abstract

Missing terms in dynamical systems are a challenging problem for modeling. Recent developments in the combination of machine learning and dynamical system theory open possibilities for a solution. We show how physics-informed differential equations and machine learning-combined in the Universal Differential Equation (UDE) framework by Rackauckas et al.-can be modified to discover missing terms in systems that undergo sudden fundamental changes in their dynamical behavior called bifurcations. With this we enable the application of the UDE approach to a wider class of problems which are common in many real world applications. The choice of the loss function, which compares the training data trajectory in state space and the current estimated solution trajectory of the UDE to optimize the solution, plays a crucial role within this approach. The Mean Square Error as loss function contains the risk of a reconstruction which completely misses the dynamical behavior of the training data. By contrast, our suggested trajectory-based loss function which optimizes two largely independent components, the length and angle of state space vectors of the training data, performs reliable well in examples of systems from neuroscience, chemistry and biology showing Saddle-Node, Pitchfork, Hopf and Period-doubling bifurcations.
© 2021. The Author(s).

Entities:  

Year:  2021        PMID: 34650131      PMCID: PMC8516982          DOI: 10.1038/s41598-021-99609-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  13 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Artificial neural networks for solving ordinary and partial differential equations.

Authors:  I E Lagaris; A Likas; D I Fotiadis
Journal:  IEEE Trans Neural Netw       Date:  1998

3.  Impulses and Physiological States in Theoretical Models of Nerve Membrane.

Authors:  R Fitzhugh
Journal:  Biophys J       Date:  1961-07       Impact factor: 4.033

Review 4.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

5.  Ocean circulation, ice shelf, and sea ice interactions explain Dansgaard-Oeschger cycles.

Authors:  Niklas Boers; Michael Ghil; Denis-Didier Rousseau
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

6.  Hidden fluid mechanics: Learning velocity and pressure fields from flow visualizations.

Authors:  Maziar Raissi; Alireza Yazdani; George Em Karniadakis
Journal:  Science       Date:  2020-01-30       Impact factor: 47.728

7.  Discovering governing equations from data by sparse identification of nonlinear dynamical systems.

Authors:  Steven L Brunton; Joshua L Proctor; J Nathan Kutz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

8.  Self-oscillations in glycolysis. 1. A simple kinetic model.

Authors:  E E Sel'kov
Journal:  Eur J Biochem       Date:  1968-03

9.  Multistability and tipping: From mathematics and physics to climate and brain-Minireview and preface to the focus issue.

Authors:  Ulrike Feudel; Alexander N Pisarchik; Kenneth Showalter
Journal:  Chaos       Date:  2018-03       Impact factor: 3.642

10.  Trajectories of the Earth System in the Anthropocene.

Authors:  Will Steffen; Johan Rockström; Katherine Richardson; Timothy M Lenton; Carl Folke; Diana Liverman; Colin P Summerhayes; Anthony D Barnosky; Sarah E Cornell; Michel Crucifix; Jonathan F Donges; Ingo Fetzer; Steven J Lade; Marten Scheffer; Ricarda Winkelmann; Hans Joachim Schellnhuber
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.