Literature DB >> 34637774

A general model of multivalent binding with ligands of heterotypic subunits and multiple surface receptors.

Zhixin Cyrillus Tan1, Aaron S Meyer2.   

Abstract

Multivalent cell surface receptor binding is a ubiquitous biological phenomenon with functional and therapeutic significance. Predicting the amount of ligand binding for a cell remains an important question in computational biology as it can provide great insight into cell-to-cell communication and rational drug design toward specific targets. In this study, we extend a mechanistic, two-step multivalent binding model. This model predicts the behavior of a mixture of different multivalent ligand complexes binding to cells expressing various types of receptors. It accounts for the combinatorially large number of interactions between multiple ligands and receptors, optionally allowing a mixture of complexes with different valencies and complexes that contain heterogeneous ligand units. We derive the macroscopic predictions and demonstrate how this model enables large-scale predictions on mixture binding and the binding space of a ligand. This model thus provides an elegant and computationally efficient framework for analyzing multivalent binding.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cell surface reactions; Combinatorics; General binding model; Multivalent binding; Protein-protein interactions; Receptor-ligand interactions

Mesh:

Substances:

Year:  2021        PMID: 34637774      PMCID: PMC8612982          DOI: 10.1016/j.mbs.2021.108714

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  17 in total

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Authors:  J D Stone; J R Cochran; L J Stern
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

2.  Multivalent Ligand Binding to Cell Membrane Antigens: Defining the Interplay of Affinity, Valency, and Expression Density.

Authors:  Clifford M Csizmar; Jacob R Petersburg; Thomas J Perry; Lakmal Rozumalski; Benjamin J Hackel; Carston R Wagner
Journal:  J Am Chem Soc       Date:  2018-12-17       Impact factor: 15.419

3.  A Modeling and Experimental Investigation of the Effects of Antigen Density, Binding Affinity, and Antigen Expression Ratio on Bispecific Antibody Binding to Cell Surface Targets.

Authors:  John J Rhoden; Gregory L Dyas; Victor J Wroblewski
Journal:  J Biol Chem       Date:  2016-03-28       Impact factor: 5.157

4.  Cell-Binding Assays for Determining the Affinity of Protein-Protein Interactions: Technologies and Considerations.

Authors:  S A Hunter; J R Cochran
Journal:  Methods Enzymol       Date:  2016-08-08       Impact factor: 1.600

5.  Mechanisms of noncanonical binding dynamics in multivalent protein-protein interactions.

Authors:  Wesley J Errington; Bence Bruncsics; Casim A Sarkar
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

Review 6.  Multispecific drugs herald a new era of biopharmaceutical innovation.

Authors:  Raymond J Deshaies
Journal:  Nature       Date:  2020-04-15       Impact factor: 49.962

7.  Scaffold-mediated nucleation of protein signaling complexes: elementary principles.

Authors:  Jin Yang; William S Hlavacek
Journal:  Math Biosci       Date:  2011-06-12       Impact factor: 2.144

8.  Quantifying aggregation of IgE-FcepsilonRI by multivalent antigen.

Authors:  W S Hlavacek; A S Perelson; B Sulzer; J Bold; J Paar; W Gorman; R G Posner
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

9.  Quantitative effect of scaffold abundance on signal propagation.

Authors:  Stephen A Chapman; Anand R Asthagiri
Journal:  Mol Syst Biol       Date:  2009-10-13       Impact factor: 11.429

10.  Bivalent ligands with rigid double-stranded DNA spacers reveal structural constraints on signaling by Fc epsilon RI.

Authors:  Jodi M Paar; Nancie T Harris; David Holowka; Barbara Baird
Journal:  J Immunol       Date:  2002-07-15       Impact factor: 5.422

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  1 in total

1.  A quantitative view of strategies to engineer cell-selective ligand binding.

Authors:  Zhixin Cyrillus Tan; Brian T Orcutt-Jahns; Aaron S Meyer
Journal:  Integr Biol (Camb)       Date:  2021-12-30       Impact factor: 2.192

  1 in total

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