Literature DB >> 34635849

MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community.

Susanne Kunis1, Stefanie Weidtkamp-Peters2, Sebastian Hänsch3, Christian Schmidt4, Frances Wong5, Caterina Strambio-De-Castillia6.   

Abstract

Entities:  

Mesh:

Year:  2021        PMID: 34635849      PMCID: PMC9514507          DOI: 10.1038/s41592-021-01288-z

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


× No keyword cloud information.
  7 in total

1.  Informatics and quantitative analysis in biological imaging.

Authors:  Jason R Swedlow; Ilya Goldberg; Erik Brauner; Peter K Sorger
Journal:  Science       Date:  2003-04-04       Impact factor: 47.728

2.  Metadata matters: access to image data in the real world.

Authors:  Melissa Linkert; Curtis T Rueden; Chris Allan; Jean-Marie Burel; Will Moore; Andrew Patterson; Brian Loranger; Josh Moore; Carlos Neves; Donald Macdonald; Aleksandra Tarkowska; Caitlin Sticco; Emma Hill; Mike Rossner; Kevin W Eliceiri; Jason R Swedlow
Journal:  J Cell Biol       Date:  2010-05-31       Impact factor: 10.539

3.  OMERO: flexible, model-driven data management for experimental biology.

Authors:  Chris Allan; Jean-Marie Burel; Josh Moore; Colin Blackburn; Melissa Linkert; Scott Loynton; Donald Macdonald; William J Moore; Carlos Neves; Andrew Patterson; Michael Porter; Aleksandra Tarkowska; Brian Loranger; Jerome Avondo; Ingvar Lagerstedt; Luca Lianas; Simone Leo; Katherine Hands; Ron T Hay; Ardan Patwardhan; Christoph Best; Gerard J Kleywegt; Gianluigi Zanetti; Jason R Swedlow
Journal:  Nat Methods       Date:  2012-02-28       Impact factor: 28.547

4.  Metadata management for high content screening in OMERO.

Authors:  Simon Li; Sébastien Besson; Colin Blackburn; Mark Carroll; Richard K Ferguson; Helen Flynn; Kenneth Gillen; Roger Leigh; Dominik Lindner; Melissa Linkert; William J Moore; Balaji Ramalingam; Emil Rozbicki; Gabriella Rustici; Aleksandra Tarkowska; Petr Walczysko; Eleanor Williams; Chris Allan; Jean-Marie Burel; Josh Moore; Jason R Swedlow
Journal:  Methods       Date:  2015-10-22       Impact factor: 3.608

5.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

6.  The Image Data Resource: A Bioimage Data Integration and Publication Platform.

Authors:  Eleanor Williams; Josh Moore; Simon W Li; Gabriella Rustici; Aleksandra Tarkowska; Anatole Chessel; Simone Leo; Bálint Antal; Richard K Ferguson; Ugis Sarkans; Alvis Brazma; Rafael E Carazo Salas; Jason R Swedlow
Journal:  Nat Methods       Date:  2017-06-19       Impact factor: 28.547

7.  A call for public archives for biological image data.

Authors:  Jan Ellenberg; Jason R Swedlow; Mary Barlow; Charles E Cook; Ugis Sarkans; Ardan Patwardhan; Alvis Brazma; Ewan Birney
Journal:  Nat Methods       Date:  2018-11       Impact factor: 28.547

  7 in total
  3 in total

1.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.

Authors:  Mathias Hammer; Maximiliaan Huisman; Alessandro Rigano; Ulrike Boehm; James J Chambers; Nathalie Gaudreault; Alison J North; Jaime A Pimentel; Damir Sudar; Peter Bajcsy; Claire M Brown; Alexander D Corbett; Orestis Faklaris; Judith Lacoste; Alex Laude; Glyn Nelson; Roland Nitschke; Farzin Farzam; Carlas S Smith; David Grunwald; Caterina Strambio-De-Castillia
Journal:  Nat Methods       Date:  2021-12       Impact factor: 47.990

2.  Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data.

Authors:  Marie-Hélène Bourget; Lee Kamentsky; Satrajit S Ghosh; Giacomo Mazzamuto; Alberto Lazari; Christopher J Markiewicz; Robert Oostenveld; Guiomar Niso; Yaroslav O Halchenko; Ilona Lipp; Sylvain Takerkart; Paule-Joanne Toussaint; Ali R Khan; Gustav Nilsonne; Filippo Maria Castelli; Julien Cohen-Adad
Journal:  Front Neurosci       Date:  2022-04-19       Impact factor: 5.152

3.  Reference bioimaging to assess the phenotypic trait diversity of bryophytes within the family Scapaniaceae.

Authors:  Kristian Peters; Birgitta König-Ries
Journal:  Sci Data       Date:  2022-10-04       Impact factor: 8.501

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.