Literature DB >> 34633584

A novel approach for rapid cell assessment to estimate DNA recovery from human bone tissue.

Thien Ngoc Le1, Oliva Handt1,2, Julianne Henry1,2, Adrian Linacre3.   

Abstract

We report on the use of a DNA staining dye to locate and record nucleated osteocytes and other bone-related cells within sections of archived formalin-fixed and paraffin-embedded human tibia from which informative DNA profiles were obtained. Eleven of these archived tibia samples were sectioned at a thickness of 5 µm. Diamond™ Nucleic Acid Dye was applied to the sections and cells within the matrix of the bone fluoresced so that their location and number of cells could be photographed. DNA was isolated from these 11 samples using a standard extraction process and the yields were quantified by real-time PCR. Complete STR profiles were generated from ten bone extracts where low-level inhibition was recorded with an incomplete STR profile obtained from one sample with higher inhibition. The stained image of this sample showed that few cells were present. There was a significant relationship between the number of DD-stained cells and the number of alleles obtained (p < 0.05). Staining cells to determine the prevalence of bone cell nuclei allows a triage of samples prior to any subsequent DNA profiling.
© 2021. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Bone cells; Diamond nucleic acid dye; Human bone; Osteocytes; STR typing

Mesh:

Substances:

Year:  2021        PMID: 34633584     DOI: 10.1007/s12024-021-00428-3

Source DB:  PubMed          Journal:  Forensic Sci Med Pathol        ISSN: 1547-769X            Impact factor:   2.456


  23 in total

1.  PCR analysis in archival postmortem tissues.

Authors:  S Bonin; F Petrera; B Niccolini; G Stanta
Journal:  Mol Pathol       Date:  2003-06

2.  Genotyping of DNA samples isolated from formalin-fixed paraffin-embedded tissues using preamplification.

Authors:  Renee Baak-Pablo; Vincent Dezentje; Henk-Jan Guchelaar; Tahar van der Straaten
Journal:  J Mol Diagn       Date:  2010-09-16       Impact factor: 5.568

3.  Decrease in the osteocyte lacunar density accompanied by hypermineralized lacunar occlusion reveals failure and delay of remodeling in aged human bone.

Authors:  Björn Busse; Danijela Djonic; Petar Milovanovic; Michael Hahn; Klaus Püschel; Robert O Ritchie; Marija Djuric; Michael Amling
Journal:  Aging Cell       Date:  2010-10-28       Impact factor: 9.304

4.  Glyoxal fixation: how it works and why it only occasionally needs antigen retrieval.

Authors:  R W Dapson
Journal:  Biotech Histochem       Date:  2007-06       Impact factor: 1.718

5.  Highly effective DNA extraction method for nuclear short tandem repeat testing of skeletal remains from mass graves.

Authors:  Jon Davoren; Daniel Vanek; Rijad Konjhodzić; John Crews; Edwin Huffine; Thomas J Parsons
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

6.  Effect of nucleic acid binding dyes on DNA extraction, amplification, and STR typing.

Authors:  Alicia M Haines; Shanan S Tobe; Hilton J Kobus; Adrian Linacre
Journal:  Electrophoresis       Date:  2015-10       Impact factor: 3.535

7.  The Probabilistic Genotyping Software STRmix: Utility and Evidence for its Validity.

Authors:  John S Buckleton; Jo-Anne Bright; Simone Gittelson; Tamyra R Moretti; Anthony J Onorato; Frederick R Bieber; Bruce Budowle; Duncan A Taylor
Journal:  J Forensic Sci       Date:  2018-08-21       Impact factor: 1.832

8.  A Powder-free DNA Extraction Workflow for Skeletal Samples.

Authors:  Michelle Harrel; Sheree Hughes-Stamm
Journal:  J Forensic Sci       Date:  2019-10-02       Impact factor: 1.832

9.  Macromolecular changes caused by formalin fixation and antigen retrieval.

Authors:  R W Dapson
Journal:  Biotech Histochem       Date:  2007-06       Impact factor: 1.718

10.  Determination of materials present in skeletonized human remains and the associated DNA: Development of a GC/MS protocol.

Authors:  Suni M Edson; Marcel Roberts
Journal:  Forensic Sci Int Synerg       Date:  2019-08-10
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