Literature DB >> 34628511

Collinsella ihumii sp. nov., a new anaerobic bacterium isolated from human stool.

Mariem Ben Khedher1,2, Fatou Samba Diouf1,2, Cheikh Ibrahima Lo2,3, Stéphane Alibar1,2, Guillaume Durand2,3, Didier Raoult2,3, Pierre-Edouard Fournier2,3, Florence Fenollar4,5.   

Abstract

Strain GD8 is a new species belonging to the order Coriobacteriales that was isolated from fresh stool of a French volunteer. It is an anaerobic Gram-positive bacterium isolated from human gut microbiota. The sequence analysis of the 16S rRNA gene showed that our strain GD8 was 96.2% of similarity with Collinsella massiliensis strain An5 which was the phylogenetically related species. Its genome size is 2,836,446 bp with 64.1 mol% of G + C content. Strain GD8T (= CSUR P2019 = DSM 101062) is the type strain of the new species Collinsella ihumii sp. nov.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Collinsella ihumii; Culturomics; Human gut; Microbiota; Taxono-genomics

Mesh:

Substances:

Year:  2021        PMID: 34628511     DOI: 10.1007/s00203-021-02562-6

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  21 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Collinsella vaginalis sp. nov. strain Marseille-P2666T, a new member of the Collinsella genus isolated from the genital tract of a patient suffering from bacterial vaginosis.

Authors:  Awa Diop; Khoudia Diop; Enora Tomei; Nicholas Armstrong; Florence Bretelle; Didier Raoult; Florence Fenollar; Pierre-Edouard Fournier
Journal:  Int J Syst Evol Microbiol       Date:  2019-02-26       Impact factor: 2.747

3.  Emendation of genus Collinsella and proposal of Collinsella stercoris sp. nov. and Collinsella intestinalis sp. nov.

Authors:  A Kageyama; Y Benno
Journal:  Int J Syst Evol Microbiol       Date:  2000-09       Impact factor: 2.747

4.  Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov.

Authors:  A Kageyama; Y Benno; T Nakase
Journal:  Int J Syst Bacteriol       Date:  1999-04

5.  An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis.

Authors:  Jun Chen; Kerry Wright; John M Davis; Patricio Jeraldo; Eric V Marietta; Joseph Murray; Heidi Nelson; Eric L Matteson; Veena Taneja
Journal:  Genome Med       Date:  2016-04-21       Impact factor: 11.117

6.  Description of 'Gorbachella massiliensis' gen. nov., sp. nov., 'Fenollaria timonensis' sp. nov., 'Intestinimonas timonensis' sp. nov. and 'Collinsella ihuae' sp. nov. isolated from healthy fresh stools with culturomics.

Authors:  G A Durand; F Cadoret; J C Lagier; P E Fournier; D Raoult
Journal:  New Microbes New Infect       Date:  2017-01-16

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

8.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

9.  Genome sequence and description of Anaerosalibacter massiliensis sp. nov.

Authors:  N Dione; S A Sankar; J-C Lagier; S Khelaifia; C Michele; N Armstrong; M Richez; J Abrahão; D Raoult; P-E Fournier
Journal:  New Microbes New Infect       Date:  2016-01-11

10.  GenBank.

Authors:  Karen Clark; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2015-11-20       Impact factor: 16.971

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