Literature DB >> 34626810

A phylogenomic perspective on the evolutionary history of the stonefly genus Suwallia (Plecoptera: Chloroperlidae) revealed by ultraconserved genomic elements.

Derek D Houston1, Jordan D Satler2, Taylor K Stack3, Hannah M Carroll4, Alissa M Bevan5, Autumn L Moya6, Kevin D Alexander7.   

Abstract

Evolutionary biologists have long sought to disentangle phylogenetic relationships among taxa spanning the tree of life, an increasingly important task as anthropogenic influences accelerate population declines and species extinctions, particularly in insects. Phylogenetic analyses are commonly used to identify unique evolutionary lineages, to clarify taxonomic designations of the focal taxa, and to inform conservation decisions. Advances in DNA sequencing techniques have increasingly facilitated the ability of researchers to apply genomic methods to phylogenetic analyses, even for non-model organisms. Stoneflies are non-model insects that are important bioindicators of the quality of freshwater habitats and landscape disturbance as they spend the immature stages of their life cycles in fresh water, and the adult stages in terrestrial environments. Phylogenetic relationships within the stonefly genus Suwallia (Insecta: Plecoptera: Chloroperlidae) are poorly understood, and have never been assessed using molecular data. We used DNA sequence data from genome-wide ultraconserved element loci to generate the first molecular phylogeny for the group and assess its monophyly. We found that Palearctic and Nearctic Suwallia do not form reciprocally monophyletic clades, and that a biogeographic history including dispersal, vicariance, and founder event speciation via jump dispersal best explains the geographic distribution of this group. Our results also strongly suggest that Neaviperla forcipata (Neave, 1929) is nested within Suwallia, and the concept of the genus Suwallia should be revised to include it. Thus, we formally propose a new taxonomic combination wherein Neaviperla forcipata (Neave, 1929) is reclassified as Suwallia forcipata (Neave, 1929). Moreover, some Suwallia species (e.g., S. amoenacolens, S. kerzhneri, S. marginata, S. pallidula, and S. starki) exhibit pronounced cryptic diversity that is worthy of further investigation. These findings provide a first glimpse into the evolutionary history of Suwallia, improve our understanding of stonefly diversity in the tribe Suwallini, and highlight areas where additional research is needed.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aquatic insects; Biodiversity; Phylogenetics; Stoneflies; UCEs

Mesh:

Year:  2021        PMID: 34626810      PMCID: PMC9297666          DOI: 10.1016/j.ympev.2021.107320

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   5.019


  57 in total

Review 1.  Phylogenetic system and zoogeography of the Plecoptera.

Authors:  P Zwick
Journal:  Annu Rev Entomol       Date:  2000       Impact factor: 19.686

2.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

3.  Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach.

Authors:  Michael J Sanderson
Journal:  Mol Biol Evol       Date:  2002-01       Impact factor: 16.240

4.  Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites.

Authors:  Julia Chifman; Laura Kubatko
Journal:  J Theor Biol       Date:  2015-03-17       Impact factor: 2.691

5.  A simple strategy for recovering ultraconserved elements, exons, and introns from low coverage shotgun sequencing of museum specimens: Placement of the partridge genus Tropicoperdix within the galliformes.

Authors:  Edward L Braun; Michael Forthman; Rebecca T Kimball; Zhengwang Zhang
Journal:  Mol Phylogenet Evol       Date:  2018-09-07       Impact factor: 4.286

Review 6.  Targeted capture in evolutionary and ecological genomics.

Authors:  Matthew R Jones; Jeffrey M Good
Journal:  Mol Ecol       Date:  2015-07-30       Impact factor: 6.185

7.  Onset of glaciation drove simultaneous vicariant isolation of Alpine insects in New Zealand.

Authors:  Graham A McCulloch; Graham P Wallis; Jonathan M Waters
Journal:  Evolution       Date:  2010-02-19       Impact factor: 3.694

8.  Complete Mitochondrial Genome of Suwallia teleckojensis (Plecoptera: Chloroperlidae) and Implications for the Higher Phylogeny of Stoneflies.

Authors:  Ying Wang; Jin-Jun Cao; Wei-Hai Li
Journal:  Int J Mol Sci       Date:  2018-02-28       Impact factor: 5.923

9.  Uneven Missing Data Skew Phylogenomic Relationships within the Lories and Lorikeets.

Authors:  Brian Tilston Smith; William M Mauck; Brett W Benz; Michael J Andersen
Journal:  Genome Biol Evol       Date:  2020-07-01       Impact factor: 3.416

Review 10.  Plecoptera of Canada.

Authors:  Boris C Kondratieff; R Edward DeWalt; Chris J Verdone
Journal:  Zookeys       Date:  2019-01-24       Impact factor: 1.546

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