Literature DB >> 34625848

Evaluation of hydrogen bonds formation in the selected rare sugars based on 6-31G* and 6-311 +  + G(d,p) basis sets.

Zahrabatoul Mosapour Kotena1,2, Mozhan Razi3, Sara Ahmadi4.   

Abstract

Rare sugars are monosaccharides with tremendous potential for applications in pharmaceutical, cosmetics, nutraceutical, and flavors industries. The four rare sugars, including gulose, allose, altrose, and talose, are stereoisomers that are different in the hydroxyl group orientation (axial or equatorial) on the C2-4 atoms. The basis sets effect in evaluation of the possibility intramolecular hydrogen bonding (H-bonds) in the selected rare sugars was studied from 6-31G* to 6-311 ++ G(d,p) basis sets using DFT, AIM, and NBO methods. The results show that the selected rare sugars are more stable at 6-311 ++ G(d,p) basis sets compared to 6-31G* because their electronic energies were reduced between 158 and 164 (kcal.mol-1). The overall effect of basis set enhancement is to decrease H-bond energies in the range of  1.25 to 2.51 (kcal.mol-1) and stabilization energies between 2 and 5 (kcal.mol-1) in the selected rare sugars at the DFT level of theory. The intramolecular H-bond distances, H-bond energies obtained from the AIM analysis, and also the second-order stabilization energies obtained from the NBO analysis were fluctuated largely depending on the basis set. In summary, it was found that the use of 6-311 ++ G(d,p) basis set to be more efficient results in rare sugars geometry than the 6-31G* basis set.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Basis set; DFT; Hydrogen bond; Rare sugars

Mesh:

Substances:

Year:  2021        PMID: 34625848     DOI: 10.1007/s00894-021-04916-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  8 in total

Review 1.  Short-range interactions between non-ionic surfactant layers.

Authors:  Per M Claesson; Mikael Kjellin; Orlando J Rojas; Cosima Stubenrauch
Journal:  Phys Chem Chem Phys       Date:  2006-10-19       Impact factor: 3.676

Review 2.  A rare sugar xylitol. Part II: biotechnological production and future applications of xylitol.

Authors:  Tom Birger Granström; Ken Izumori; Matti Leisola
Journal:  Appl Microbiol Biotechnol       Date:  2007-01-11       Impact factor: 4.813

3.  Hydrogen bond integrity between MHC class II molecules and bound peptide determines the intracellular fate of MHC class II molecules.

Authors:  L S Arneson; J F Katz; M Liu; A J Sant
Journal:  J Immunol       Date:  2001-12-15       Impact factor: 5.422

4.  Hydrogen bonds in galactopyranoside and glucopyranoside: a density functional theory study.

Authors:  Zahrabatoul Mosapour Kotena; Reza Behjatmanesh-Ardakani; Rauzah Hashim; Vijayan Manickam Achari
Journal:  J Mol Model       Date:  2012-09-13       Impact factor: 1.810

5.  Comparison of acidity and metal ion affinity of D-Glucosamine and N-acetyl-D-glucosamine, a DFT study.

Authors:  Zahrabatoul Mosapour Kotena; Alireza Fattahi
Journal:  J Mol Graph Model       Date:  2020-04-08       Impact factor: 2.518

6.  Enhancement of the radiation effects by D-allose in head and neck cancer cells.

Authors:  Hiroshi Hoshikawa; Kanako Indo; Terushige Mori; Nozomu Mori
Journal:  Cancer Lett       Date:  2011-03-24       Impact factor: 8.679

Review 7.  Recent advances on applications and biotechnological production of D-psicose.

Authors:  Wanmeng Mu; Wenli Zhang; Yinghui Feng; Bo Jiang; Leon Zhou
Journal:  Appl Microbiol Biotechnol       Date:  2012-05-10       Impact factor: 4.813

Review 8.  Sugar substitutes: their energy values, bulk characteristics, and potential health benefits.

Authors:  G V Levin; L R Zehner; J P Saunders; J R Beadle
Journal:  Am J Clin Nutr       Date:  1995-11       Impact factor: 7.045

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.