Literature DB >> 34624108

The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism.

Sandra E Zimmermann1, Ruben M Benstein1,2, María Flores-Tornero3,4, Samira Blau1, Armand D Anoman3,4, Sara Rosa-Téllez3,4, Silke C Gerlich1,5, Mohamed A Salem6,7, Saleh Alseekh6,8, Stanislav Kopriva1,5, Vera Wewer1,5, Ulf-Ingo Flügge1,5, Richard P Jacoby1,5, Alisdair R Fernie6,8, Patrick Giavalisco6,9, Roc Ros3,4, Stephan Krueger1.   

Abstract

Because it is the precursor for various essential cellular components, the amino acid serine is indispensable for every living organism. In plants, serine is synthesized by two major pathways: photorespiration and the phosphorylated pathway of serine biosynthesis (PPSB). However, the importance of these pathways in providing serine for plant development is not fully understood. In this study, we examine the relative contributions of photorespiration and PPSB to providing serine for growth and metabolism in the C3 model plant Arabidopsis thaliana. Our analyses of cell proliferation and elongation reveal that PPSB-derived serine is indispensable for plant growth and its loss cannot be compensated by photorespiratory serine biosynthesis. Using isotope labeling, we show that PPSB-deficiency impairs the synthesis of proteins and purine nucleotides in plants. Furthermore, deficiency in PPSB-mediated serine biosynthesis leads to a strong accumulation of metabolites related to nitrogen metabolism. This result corroborates 15N-isotope labeling in which we observed an increased enrichment in labeled amino acids in PPSB-deficient plants. Expression studies indicate that elevated ammonium uptake and higher glutamine synthetase/glutamine oxoglutarate aminotransferase (GS/GOGAT) activity causes this phenotype. Metabolic analyses further show that elevated nitrogen assimilation and reduced amino acid turnover into proteins and nucleotides are the most likely driving forces for changes in respiratory metabolism and amino acid catabolism in PPSB-deficient plants. Accordingly, we conclude that even though photorespiration generates high amounts of serine in plants, PPSB-derived serine is more important for plant growth and its deficiency triggers the induction of nitrogen assimilation, most likely as an amino acid starvation response. © American Society of Plant Biologists 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Year:  2021        PMID: 34624108      PMCID: PMC8260141          DOI: 10.1093/plphys/kiab167

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.005


  81 in total

1.  High-throughput colorimetric method for the parallel assay of glyoxylic acid and ammonium in a single extract.

Authors:  Andrea Bräutigam; David Gagneul; Andreas P M Weber
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2.  TagFinder for the quantitative analysis of gas chromatography--mass spectrometry (GC-MS)-based metabolite profiling experiments.

Authors:  Alexander Luedemann; Katrin Strassburg; Alexander Erban; Joachim Kopka
Journal:  Bioinformatics       Date:  2008-01-19       Impact factor: 6.937

Review 3.  Serine and one-carbon metabolism in cancer.

Authors:  Ming Yang; Karen H Vousden
Journal:  Nat Rev Cancer       Date:  2016-09-16       Impact factor: 60.716

4.  Control of cell proliferation in Arabidopsis thaliana by microRNA miR396.

Authors:  Ramiro E Rodriguez; Martin A Mecchia; Juan M Debernardi; Carla Schommer; Detlef Weigel; Javier F Palatnik
Journal:  Development       Date:  2010-01       Impact factor: 6.868

5.  Cloning, sequencing and expression of rat liver 3-phosphoglycerate dehydrogenase.

Authors:  Y Achouri; M H Rider; E V Schaftingen; M Robbi
Journal:  Biochem J       Date:  1997-04-15       Impact factor: 3.857

6.  Enzymes of serine metabolism in normal, developing and neoplastic rat tissues.

Authors:  K Snell
Journal:  Adv Enzyme Regul       Date:  1984

7.  Nitrate assimilation in plant shoots depends on photorespiration.

Authors:  Shimon Rachmilevitch; Asaph B Cousins; Arnold J Bloom
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

8.  The phosphorylated pathway of serine biosynthesis is essential both for male gametophyte and embryo development and for root growth in Arabidopsis.

Authors:  Borja Cascales-Miñana; Jesús Muñoz-Bertomeu; María Flores-Tornero; Armand Djoro Anoman; José Pertusa; Manuel Alaiz; Sonia Osorio; Alisdair R Fernie; Juan Segura; Roc Ros
Journal:  Plant Cell       Date:  2013-06-14       Impact factor: 11.277

9.  Contributions of two cytosolic glutamine synthetase isozymes to ammonium assimilation in Arabidopsis roots.

Authors:  Noriyuki Konishi; Keiki Ishiyama; Marcel Pascal Beier; Eri Inoue; Keiichi Kanno; Tomoyuki Yamaya; Hideki Takahashi; Soichi Kojima
Journal:  J Exp Bot       Date:  2017-01-01       Impact factor: 6.992

10.  Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field.

Authors:  Paul F South; Amanda P Cavanagh; Helen W Liu; Donald R Ort
Journal:  Science       Date:  2019-01-03       Impact factor: 47.728

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  1 in total

1.  Over-Expression of Phosphoserine Aminotransferase-Encoding Gene (AtPSAT1) Prompts Starch Accumulation in L. turionifera under Nitrogen Starvation.

Authors:  Lei Wang; Shuiling Li; Ling Sun; Yana Tong; Lin Yang; Yerong Zhu; Yong Wang
Journal:  Int J Mol Sci       Date:  2022-09-30       Impact factor: 6.208

  1 in total

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