Heng Li1,2. 1. Dana-Farber Cancer Institute, 450 Brookline Ave, Boston, MA 02215, USA. 2. Harvard Medical School, 10 Shattuck St, Boston, MA 02215, USA.
Abstract
SUMMARY: We present several recent improvements to minimap2, a versatile pairwise aligner for nucleotide sequences. Now minimap2 v2.22 can more accurately map long reads to highly repetitive regions and align through insertions or deletions up to 100kb by default, addressing major weakness in minimap2 v2.18 or earlier. AVAILABILITY AND IMPLEMENTATION: https://github.com/lh3/minimap2.
SUMMARY: We present several recent improvements to minimap2, a versatile pairwise aligner for nucleotide sequences. Now minimap2 v2.22 can more accurately map long reads to highly repetitive regions and align through insertions or deletions up to 100kb by default, addressing major weakness in minimap2 v2.18 or earlier. AVAILABILITY AND IMPLEMENTATION: https://github.com/lh3/minimap2.
Authors: Karen H Miga; Sergey Koren; Arang Rhie; Mitchell R Vollger; Ariel Gershman; Andrey Bzikadze; Shelise Brooks; Edmund Howe; David Porubsky; Glennis A Logsdon; Valerie A Schneider; Tamara Potapova; Jonathan Wood; William Chow; Joel Armstrong; Jeanne Fredrickson; Evgenia Pak; Kristof Tigyi; Milinn Kremitzki; Christopher Markovic; Valerie Maduro; Amalia Dutra; Gerard G Bouffard; Alexander M Chang; Nancy F Hansen; Amy B Wilfert; Françoise Thibaud-Nissen; Anthony D Schmitt; Jon-Matthew Belton; Siddarth Selvaraj; Megan Y Dennis; Daniela C Soto; Ruta Sahasrabudhe; Gulhan Kaya; Josh Quick; Nicholas J Loman; Nadine Holmes; Matthew Loose; Urvashi Surti; Rosa Ana Risques; Tina A Graves Lindsay; Robert Fulton; Ira Hall; Benedict Paten; Kerstin Howe; Winston Timp; Alice Young; James C Mullikin; Pavel A Pevzner; Jennifer L Gerton; Beth A Sullivan; Evan E Eichler; Adam M Phillippy Journal: Nature Date: 2020-07-14 Impact factor: 49.962
Authors: Anna G Green; Chang Ho Yoon; Andrew Beam; Maha Farhat; Michael L Chen; Yasha Ektefaie; Mack Fina; Luca Freschi; Matthias I Gröschel; Isaac Kohane Journal: Nat Commun Date: 2022-07-02 Impact factor: 17.694
Authors: Aryn P Wilder; Olga Dudchenko; Caitlin Curry; Marisa Korody; Sheela P Turbek; Mark Daly; Ann Misuraca; Gaojianyong Wang; Ruqayya Khan; David Weisz; Julie Fronczek; Erez Lieberman Aiden; Marlys L Houck; Debra M Shier; Oliver A Ryder; Cynthia C Steiner Journal: Genome Biol Evol Date: 2022-08-03 Impact factor: 4.065
Authors: Maria G Khrenova; Tatiana V Panova; Vladimir A Rodin; Maxim A Kryakvin; Dmitrii A Lukyanov; Ilya A Osterman; Maria I Zvereva Journal: Int J Mol Sci Date: 2022-08-02 Impact factor: 6.208