Literature DB >> 34613815

Targeting integrated epigenetic and metabolic pathways in lethal childhood PFA ependymomas.

Pooja Panwalkar1, Benita Tamrazi2, Derek Dang1, Chan Chung3, Stefan Sweha1, Siva Kumar Natarajan1, Matthew Pun1, Jill Bayliss1, Martin P Ogrodzinski4,5, Drew Pratt1, Brendan Mullan6, Debra Hawes7, Fusheng Yang7, Chao Lu8, Benjamin R Sabari9, Abhinav Achreja10,11, Jin Heon10,11, Olamide Animasahun10,11,12, Marcin Cieslik1, Christopher Dunham13,14, Stephen Yip14, Juliette Hukin15, Joanna J Phillips16,17, Miriam Bornhorst18,19, Andrea M Griesinger20,21, Andrew M Donson20,21, Nicholas K Foreman21,22, Hugh J L Garton22, Jason Heth22, Karin Muraszko22, Javad Nazarian18,19,23, Carl Koschmann6, Li Jiang24, Mariella G Filbin24, Deepak Nagrath10,11, Marcel Kool25,26,27, Andrey Korshunov28, Stefan M Pfister25,26,29, Richard J Gilbertson30, C David Allis9, Arul M Chinnaiyan1, Sophia Y Lunt4,31, Stefan Blüml2, Alexander R Judkins7, Sriram Venneti1,6.   

Abstract

Childhood posterior fossa group A ependymomas (PFAs) have limited treatment options and bear dismal prognoses compared to group B ependymomas (PFBs). PFAs overexpress the oncohistone-like protein EZHIP (enhancer of Zeste homologs inhibitory protein), causing global reduction of repressive histone H3 lysine 27 trimethylation (H3K27me3), similar to the oncohistone H3K27M. Integrated metabolic analyses in patient-derived cells and tumors, single-cell RNA sequencing of tumors, and noninvasive metabolic imaging in patients demonstrated enhanced glycolysis and tricarboxylic acid (TCA) cycle metabolism in PFAs. Furthermore, high glycolytic gene expression in PFAs was associated with a poor outcome. PFAs demonstrated high EZHIP expression associated with poor prognosis and elevated activating mark histone H3 lysine 27 acetylation (H3K27ac). Genomic H3K27ac was enriched in PFAs at key glycolytic and TCA cycle–related genes including hexokinase-2 and pyruvate dehydrogenase. Similarly, mouse neuronal stem cells (NSCs) expressing wild-type EZHIP (EZHIP-WT) versus catalytically attenuated EZHIP-M406K demonstrated H3K27ac enrichment at hexokinase-2 and pyruvate dehydrogenase, accompanied by enhanced glycolysis and TCA cycle metabolism. AMPKα-2, a key component of the metabolic regulator AMP-activated protein kinase (AMPK), also showed H3K27ac enrichment in PFAs and EZHIP-WT NSCs. The AMPK activator metformin lowered EZHIP protein concentrations, increased H3K27me3, suppressed TCA cycle metabolism, and showed therapeutic efficacy in vitro and in vivo in patient-derived PFA xenografts in mice. Our data indicate that PFAs and EZHIP-WT–expressing NSCs are characterized by enhanced glycolysis and TCA cycle metabolism. Repurposing the antidiabetic drug metformin lowered pathogenic EZHIP, increased H3K27me3, and suppressed tumor growth, suggesting that targeting integrated metabolic/epigenetic pathways is a potential therapeutic strategy for treating childhood ependymomas.

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Year:  2021        PMID: 34613815      PMCID: PMC8762577          DOI: 10.1126/scitranslmed.abc0497

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN: 1946-6234            Impact factor:   19.319


  35 in total

1.  Immunohistochemical analysis of H3K27me3 demonstrates global reduction in group-A childhood posterior fossa ependymoma and is a powerful predictor of outcome.

Authors:  Pooja Panwalkar; Jonathan Clark; Vijay Ramaswamy; Debra Hawes; Fusheng Yang; Christopher Dunham; Stephen Yip; Juliette Hukin; Yilun Sun; Matthew J Schipper; Lukas Chavez; Ashley Margol; Melike Pekmezci; Chan Chung; Adam Banda; Jill M Bayliss; Sarah J Curry; Mariarita Santi; Fausto J Rodriguez; Matija Snuderl; Matthias A Karajannis; Amanda M Saratsis; Craig M Horbinski; Anne-Sophie Carret; Beverly Wilson; Donna Johnston; Lucie Lafay-Cousin; Shayna Zelcer; David Eisenstat; Marianna Silva; Katrin Scheinemann; Nada Jabado; P Daniel McNeely; Marcel Kool; Stefan M Pfister; Michael D Taylor; Cynthia Hawkins; Andrey Korshunov; Alexander R Judkins; Sriram Venneti
Journal:  Acta Neuropathol       Date:  2017-07-21       Impact factor: 17.088

2.  Histone H3 wild-type DIPG/DMG overexpressing EZHIP extend the spectrum diffuse midline gliomas with PRC2 inhibition beyond H3-K27M mutation.

Authors:  David Castel; Thomas Kergrohen; Arnault Tauziède-Espariat; Alan Mackay; Samia Ghermaoui; Emmanuèle Lechapt; Stefan M Pfister; Christof M Kramm; Nathalie Boddaert; Thomas Blauwblomme; Stéphanie Puget; Kévin Beccaria; Chris Jones; David T W Jones; Pascale Varlet; Jacques Grill; Marie-Anne Debily
Journal:  Acta Neuropathol       Date:  2020-03-19       Impact factor: 17.088

3.  Lowered H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas.

Authors:  Jill Bayliss; Piali Mukherjee; Chao Lu; Siddhant U Jain; Chan Chung; Daniel Martinez; Benjamin Sabari; Ashley S Margol; Pooja Panwalkar; Abhijit Parolia; Melike Pekmezci; Richard C McEachin; Marcin Cieslik; Benita Tamrazi; Benjamin A Garcia; Gaspare La Rocca; Mariarita Santi; Peter W Lewis; Cynthia Hawkins; Ari Melnick; C David Allis; Craig B Thompson; Arul M Chinnaiyan; Alexander R Judkins; Sriram Venneti
Journal:  Sci Transl Med       Date:  2016-11-23       Impact factor: 17.956

4.  Establishment of patient-derived orthotopic xenograft model of 1q+ posterior fossa group A ependymoma.

Authors:  Angela M Pierce; Davis A Witt; Andrew M Donson; Ahmed Gilani; Bridget Sanford; Martin Sill; Benjamin Van Court; Ayman Oweida; Eric W Prince; Jenna Steiner; Etienne Danis; Kathleen Dorris; Todd Hankinson; Michael H Handler; Kenneth L Jones; Sana D Karam; Natalie J Serkova; Rajeev Vibhakar; Nicholas K Foreman; Andrea M Griesinger
Journal:  Neuro Oncol       Date:  2019-12-17       Impact factor: 12.300

Review 5.  Current Clinical Challenges in Childhood Ependymoma: A Focused Review.

Authors:  Thomas E Merchant
Journal:  J Clin Oncol       Date:  2017-06-22       Impact factor: 44.544

6.  Epigenomic alterations define lethal CIMP-positive ependymomas of infancy.

Authors:  S C Mack; H Witt; R M Piro; L Gu; S Zuyderduyn; A M Stütz; X Wang; M Gallo; L Garzia; K Zayne; X Zhang; V Ramaswamy; N Jäger; D T W Jones; M Sill; T J Pugh; M Ryzhova; K M Wani; D J H Shih; R Head; M Remke; S D Bailey; T Zichner; C C Faria; M Barszczyk; S Stark; H Seker-Cin; S Hutter; P Johann; S Bender; V Hovestadt; T Tzaridis; A M Dubuc; P A Northcott; J Peacock; K C Bertrand; S Agnihotri; F M G Cavalli; I Clarke; K Nethery-Brokx; C L Creasy; S K Verma; J Koster; X Wu; Y Yao; T Milde; P Sin-Chan; J Zuccaro; L Lau; S Pereira; P Castelo-Branco; M Hirst; M A Marra; S S Roberts; D Fults; L Massimi; Y J Cho; T Van Meter; W Grajkowska; B Lach; A E Kulozik; A von Deimling; O Witt; S W Scherer; X Fan; K M Muraszko; M Kool; S L Pomeroy; N Gupta; J Phillips; A Huang; U Tabori; C Hawkins; D Malkin; P N Kongkham; W A Weiss; N Jabado; J T Rutka; E Bouffet; J O Korbel; M Lupien; K D Aldape; G D Bader; R Eils; P Lichter; P B Dirks; S M Pfister; A Korshunov; M D Taylor
Journal:  Nature       Date:  2014-02-19       Impact factor: 49.962

7.  Molecular heterogeneity and CXorf67 alterations in posterior fossa group A (PFA) ependymomas.

Authors:  Kristian W Pajtler; Ji Wen; Martin Sill; Tong Lin; Wilda Orisme; Bo Tang; Jens-Martin Hübner; Vijay Ramaswamy; Sujuan Jia; James D Dalton; Kelly Haupfear; Hazel A Rogers; Chandanamali Punchihewa; Ryan Lee; John Easton; Gang Wu; Timothy A Ritzmann; Rebecca Chapman; Lukas Chavez; Fredrick A Boop; Paul Klimo; Noah D Sabin; Robert Ogg; Stephen C Mack; Brian D Freibaum; Hong Joo Kim; Hendrik Witt; David T W Jones; Baohan Vo; Amar Gajjar; Stan Pounds; Arzu Onar-Thomas; Martine F Roussel; Jinghui Zhang; J Paul Taylor; Thomas E Merchant; Richard Grundy; Ruth G Tatevossian; Michael D Taylor; Stefan M Pfister; Andrey Korshunov; Marcel Kool; David W Ellison
Journal:  Acta Neuropathol       Date:  2018-06-16       Impact factor: 17.088

8.  Integrated Metabolic and Epigenomic Reprograming by H3K27M Mutations in Diffuse Intrinsic Pontine Gliomas.

Authors:  Chan Chung; Stefan R Sweha; Drew Pratt; Benita Tamrazi; Pooja Panwalkar; Adam Banda; Jill Bayliss; Debra Hawes; Fusheng Yang; Ho-Joon Lee; Mengrou Shan; Marcin Cieslik; Tingting Qin; Christian K Werner; Daniel R Wahl; Costas A Lyssiotis; Zhiguo Bian; J Brad Shotwell; Viveka Nand Yadav; Carl Koschmann; Arul M Chinnaiyan; Stefan Blüml; Alexander R Judkins; Sriram Venneti
Journal:  Cancer Cell       Date:  2020-08-13       Impact factor: 31.743

9.  Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma.

Authors:  Johannes Gojo; Bernhard Englinger; Li Jiang; Jens M Hübner; McKenzie L Shaw; Olivia A Hack; Sibylle Madlener; Dominik Kirchhofer; Ilon Liu; Jason Pyrdol; Volker Hovestadt; Emanuele Mazzola; Nathan D Mathewson; Maria Trissal; Daniela Lötsch; Christian Dorfer; Christine Haberler; Angela Halfmann; Lisa Mayr; Andreas Peyrl; Rene Geyeregger; Benjamin Schwalm; Monica Mauermann; Kristian W Pajtler; Till Milde; Marni E Shore; Jack E Geduldig; Kristine Pelton; Thomas Czech; Orr Ashenberg; Kai W Wucherpfennig; Orit Rozenblatt-Rosen; Sanda Alexandrescu; Keith L Ligon; Stefan M Pfister; Aviv Regev; Irene Slavc; Walter Berger; Mario L Suvà; Marcel Kool; Mariella G Filbin
Journal:  Cancer Cell       Date:  2020-07-13       Impact factor: 31.743

10.  C11orf95-RELA fusions drive oncogenic NF-κB signalling in ependymoma.

Authors:  Matthew Parker; Kumarasamypet M Mohankumar; Chandanamali Punchihewa; Ricardo Weinlich; James D Dalton; Yongjin Li; Ryan Lee; Ruth G Tatevossian; Timothy N Phoenix; Radhika Thiruvenkatam; Elsie White; Bo Tang; Wilda Orisme; Kirti Gupta; Michael Rusch; Xiang Chen; Yuxin Li; Panduka Nagahawhatte; Erin Hedlund; David Finkelstein; Gang Wu; Sheila Shurtleff; John Easton; Kristy Boggs; Donald Yergeau; Bhavin Vadodaria; Heather L Mulder; Jared Becksfort; Jared Becksford; Pankaj Gupta; Robert Huether; Jing Ma; Guangchun Song; Amar Gajjar; Thomas Merchant; Frederick Boop; Amy A Smith; Li Ding; Charles Lu; Kerri Ochoa; David Zhao; Robert S Fulton; Lucinda L Fulton; Elaine R Mardis; Richard K Wilson; James R Downing; Douglas R Green; Jinghui Zhang; David W Ellison; Richard J Gilbertson
Journal:  Nature       Date:  2014-02-19       Impact factor: 49.962

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Authors:  Ryan C Gimple; Kailin Yang; Matthew E Halbert; Sameer Agnihotri; Jeremy N Rich
Journal:  Nat Rev Cancer       Date:  2022-06-16       Impact factor: 69.800

Review 2.  Proton MR Spectroscopy of Pediatric Brain Disorders.

Authors:  Stefan Blüml; Alexander Saunders; Benita Tamrazi
Journal:  Diagnostics (Basel)       Date:  2022-06-14

Review 3.  Cell-of-Origin and Genetic, Epigenetic, and Microenvironmental Factors Contribute to the Intra-Tumoral Heterogeneity of Pediatric Intracranial Ependymoma.

Authors:  Tiziana Servidei; Donatella Lucchetti; Pierluigi Navarra; Alessandro Sgambato; Riccardo Riccardi; Antonio Ruggiero
Journal:  Cancers (Basel)       Date:  2021-12-03       Impact factor: 6.639

Review 4.  Connections between metabolism and epigenetics: mechanisms and novel anti-cancer strategy.

Authors:  Chen Chen; Zehua Wang; Yanru Qin
Journal:  Front Pharmacol       Date:  2022-07-22       Impact factor: 5.988

  4 in total

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