Literature DB >> 34611864

An Interactive View of Glycosylation.

Julien Mariethoz1,2, Davide Alocci1, Niclas G Karlsson3, Nicolle H Packer4,5, Frédérique Lisacek6.   

Abstract

The present chapter focuses on the interactive and explorative aspects of bioinformatics resources that have been recently released in glycobiology. The comparative analysis of data in a field where knowledge is scattered, incomplete, and disconnected from main biology requires efficient visualization, integration, and interactive tools that are currently only partially implemented. This overview highlights converging efforts toward building a consistent picture of protein glycosylation.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Data integration and visualization; Glycan expression profile; Glycan structure; Glycoinformatics; Glycoprotein

Mesh：

Substances：

Year:  2022        PMID： 34611864     DOI： 10.1007/978-1-0716-1685-7_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  40 in total

1.  Symbol Nomenclature for Graphical Representations of Glycans.

Authors:  Ajit Varki; Richard D Cummings; Markus Aebi; Nicole H Packer; Peter H Seeberger; Jeffrey D Esko; Pamela Stanley; Gerald Hart; Alan Darvill; Taroh Kinoshita; James J Prestegard; Ronald L Schnaar; Hudson H Freeze; Jamey D Marth; Carolyn R Bertozzi; Marilynn E Etzler; Martin Frank; Johannes Fg Vliegenthart; Thomas Lütteke; Serge Perez; Evan Bolton; Pauline Rudd; James Paulson; Minoru Kanehisa; Philip Toukach; Kiyoko F Aoki-Kinoshita; Anne Dell; Hisashi Narimatsu; William York; Naoyuki Taniguchi; Stuart Kornfeld
Journal:  Glycobiology       Date:  2015-12       Impact factor: 4.313

2.  The Systems Biology Graphical Notation.

Authors:  Nicolas Le Novère; Michael Hucka; Huaiyu Mi; Stuart Moodie; Falk Schreiber; Anatoly Sorokin; Emek Demir; Katja Wegner; Mirit I Aladjem; Sarala M Wimalaratne; Frank T Bergman; Ralph Gauges; Peter Ghazal; Hideya Kawaji; Lu Li; Yukiko Matsuoka; Alice Villéger; Sarah E Boyd; Laurence Calzone; Melanie Courtot; Ugur Dogrusoz; Tom C Freeman; Akira Funahashi; Samik Ghosh; Akiya Jouraku; Sohyoung Kim; Fedor Kolpakov; Augustin Luna; Sven Sahle; Esther Schmidt; Steven Watterson; Guanming Wu; Igor Goryanin; Douglas B Kell; Chris Sander; Herbert Sauro; Jacky L Snoep; Kurt Kohn; Hiroaki Kitano
Journal:  Nat Biotechnol       Date:  2009-08-07       Impact factor: 54.908

3.  GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

Authors:  Davide Alocci; Julien Mariethoz; Alessandra Gastaldello; Elisabeth Gasteiger; Niclas G Karlsson; Daniel Kolarich; Nicolle H Packer; Frédérique Lisacek
Journal:  J Proteome Res       Date:  2019-01-15       Impact factor: 4.466

4.  Analyzing glycan structure synthesis with the Glycan Pathway Predictor (GPP) Tool.

Authors:  Kiyoko F Aoki-Kinoshita
Journal:  Methods Mol Biol       Date:  2015

5.  Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopes.

Authors:  Davide Alocci; Marie Ghraichy; Elena Barletta; Alessandra Gastaldello; Julien Mariethoz; Frederique Lisacek
Journal:  Glycobiology       Date:  2018-06-01       Impact factor: 4.313

6.  GlyTouCan: an accessible glycan structure repository.

Authors:  Michael Tiemeyer; Kazuhiro Aoki; James Paulson; Richard D Cummings; William S York; Niclas G Karlsson; Frederique Lisacek; Nicolle H Packer; Matthew P Campbell; Nobuyuki P Aoki; Akihiro Fujita; Masaaki Matsubara; Daisuke Shinmachi; Shinichiro Tsuchiya; Issaku Yamada; Michael Pierce; René Ranzinger; Hisashi Narimatsu; Kiyoko F Aoki-Kinoshita
Journal:  Glycobiology       Date:  2017-10-01       Impact factor: 4.313

7.  LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data.

Authors:  David Sehnal; Mandar Deshpande; Radka Svobodová Vařeková; Saqib Mir; Karel Berka; Adam Midlik; Lukáš Pravda; Sameer Velankar; Jaroslav Koča
Journal:  Nat Methods       Date:  2017-11-30       Impact factor: 28.547

8.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

9.  Dalliance: interactive genome viewing on the web.

Authors:  Thomas A Down; Matias Piipari; Tim J P Hubbard
Journal:  Bioinformatics       Date:  2011-01-19       Impact factor: 6.937

10.  Treelink: data integration, clustering and visualization of phylogenetic trees.

Authors:  Christian Allende; Erik Sohn; Cedric Little
Journal:  BMC Bioinformatics       Date:  2015-12-29       Impact factor: 3.169
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