Literature DB >> 34610215

ezTrack-A Step-by-Step Guide to Behavior Tracking.

Zachary T Pennington1, Keziah S Diego1, Taylor R Francisco1, Alexa R LaBanca1, Sophia I Lamsifer1, Olga Liobimova1, Tristan Shuman1, Denise J Cai1.   

Abstract

Tracking animal behavior by video is one of the most common tasks in neuroscience. Previously, we have validated ezTrack, a free, flexible, and easy-to-use software for the analysis of animal behavior. ezTrack's Location Tracking Module can be used for the positional analysis of an individual animal and is applicable to a wide range of behavioral tasks. Separately, ezTrack's Freeze Analysis Module is designed for the analysis of defensive freezing behavior. ezTrack supports a range of desirable tools, including options for cropping and masking portions of the field of view, defining regions of interest, producing summary data for specified portions of time, algorithms to remove the influence of electrophysiology cables and other tethers, batch processing of multiple videos, and video down-sampling. Moreover, ezTrack produces a range of interactive plots and visualizations to promote users' confidence in their results. In this protocols paper, we provide step-by-step instructions for the use of ezTrack, from tips for recording behavior to instructions for using the software for video analysis.
© 2021 Wiley Periodicals LLC. Basic Protocol 1: Software environment installation Basic Protocol 2: Using the Location Tracking Module Basic Protocol 3: Using the Freeze Analysis Module. © 2021 Wiley Periodicals LLC.

Entities:  

Keywords:  behavioral analysis; fear conditioning; freeze; position tracking

Mesh:

Year:  2021        PMID: 34610215      PMCID: PMC8500532          DOI: 10.1002/cpz1.255

Source DB:  PubMed          Journal:  Curr Protoc        ISSN: 2691-1299


  14 in total

1.  Implementation of ezTrack open-source pipeline for quantifying rat locomotor behavior: Comparison to commercially available software.

Authors:  Dan L McElroy; Andrew J Roebuck; Timothy J Onofrychuk; Thaísa M Sandini; Quentin Greba; John G Howland
Journal:  Neurosci Lett       Date:  2020-02-14       Impact factor: 3.046

2.  DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.

Authors:  Alexander Mathis; Pranav Mamidanna; Kevin M Cury; Taiga Abe; Venkatesh N Murthy; Mackenzie Weygandt Mathis; Matthias Bethge
Journal:  Nat Neurosci       Date:  2018-08-20       Impact factor: 24.884

3.  Bonsai: an event-based framework for processing and controlling data streams.

Authors:  Gonçalo Lopes; Niccolò Bonacchi; João Frazão; Joana P Neto; Bassam V Atallah; Sofia Soares; Luís Moreira; Sara Matias; Pavel M Itskov; Patrícia A Correia; Roberto E Medina; Lorenza Calcaterra; Elena Dreosti; Joseph J Paton; Adam R Kampff
Journal:  Front Neuroinform       Date:  2015-04-08       Impact factor: 4.081

4.  A Basomedial Amygdala to Intercalated Cells Microcircuit Expressing PACAP and Its Receptor PAC1 Regulates Contextual Fear.

Authors:  Abha K Rajbhandari; Christopher J Octeau; Sarah Gonzalez; Zachary T Pennington; Farzanna Mohamed; Jeremy Trott; Jasmine Chavez; Erin Ngyuen; Natasha Keces; Weizhe Z Hong; Rachael L Neve; James Waschek; Baljit S Khakh; Michael S Fanselow
Journal:  J Neurosci       Date:  2021-02-26       Impact factor: 6.167

5.  A transient developmental increase in prefrontal activity alters network maturation and causes cognitive dysfunction in adult mice.

Authors:  Sebastian H Bitzenhofer; Jastyn A Pöpplau; Mattia Chini; Annette Marquardt; Ileana L Hanganu-Opatz
Journal:  Neuron       Date:  2021-03-05       Impact factor: 17.173

6.  Breakdown of spatial coding and interneuron synchronization in epileptic mice.

Authors:  Tristan Shuman; Daniel Aharoni; Denise J Cai; Christopher R Lee; Spyridon Chavlis; Lucia Page-Harley; Lauren M Vetere; Yu Feng; Chen Yi Yang; Irene Mollinedo-Gajate; Lingxuan Chen; Zachary T Pennington; Jiannis Taxidis; Sergio E Flores; Kevin Cheng; Milad Javaherian; Christina C Kaba; Naina Rao; Mimi La-Vu; Ioanna Pandi; Matthew Shtrahman; Konstantin I Bakhurin; Sotiris C Masmanidis; Baljit S Khakh; Panayiota Poirazi; Alcino J Silva; Peyman Golshani
Journal:  Nat Neurosci       Date:  2020-01-06       Impact factor: 24.884

7.  Chronic nicotine increases alcohol self-administration in adult male Wistar rats.

Authors:  Christian Montanari; Maria E Secci; Ashlyn Driskell; Katherine O McDonald; Connor L Schratz; Nicholas W Gilpin
Journal:  Psychopharmacology (Berl)       Date:  2020-09-30       Impact factor: 4.530

8.  Rodent Arena Tracker (RAT): A Machine Vision Rodent Tracking Camera and Closed Loop Control System.

Authors:  Jonathan Krynitsky; Alex A Legaria; Julia J Pai; Marcial Garmendia-Cedillos; Ghadi Salem; Tom Pohida; Alexxai V Kravitz
Journal:  eNeuro       Date:  2020-05-12

9.  ezTrack: An open-source video analysis pipeline for the investigation of animal behavior.

Authors:  Zachary T Pennington; Zhe Dong; Yu Feng; Lauren M Vetere; Lucia Page-Harley; Tristan Shuman; Denise J Cai
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

10.  Circadian Modulation of Neurons and Astrocytes Controls Synaptic Plasticity in Hippocampal Area CA1.

Authors:  John P McCauley; Maurice A Petroccione; Lianna Y D'Brant; Gabrielle C Todd; Nurat Affinnih; Justin J Wisnoski; Shergil Zahid; Swasti Shree; Alioscka A Sousa; Rose M De Guzman; Rosanna Migliore; Alexey Brazhe; Richard D Leapman; Alexander Khmaladze; Alexey Semyanov; Damian G Zuloaga; Michele Migliore; Annalisa Scimemi
Journal:  Cell Rep       Date:  2020-10-13       Impact factor: 9.423

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.