Literature DB >> 34606039

Oklahoma Nathan Shock Aging Center - assessing the basic biology of aging from genetics to protein and function.

Holly Van Remmen1,2, Willard M Freeman3,4, Benjamin F Miller5,3, Michael Kinter5, Jonathan D Wren4, Ann Chiao5, Rheal A Towner6, Timothy A Snider7, William E Sonntag3, Arlan Richardson3,8.   

Abstract

The Oklahoma Shock Nathan Shock Center is designed to deliver unique, innovative services that are not currently available at most institutions. The focus of the Center is on geroscience and the development of careers of young investigators. Pilot grants are provided through the Research Development Core to junior investigators studying aging/geroscience throughout the USA. However, the services of our Center are available to the entire research community studying aging and geroscience. The Oklahoma Nathan Shock Center provides researchers with unique services through four research cores. The Multiplexing Protein Analysis Core uses the latest mass spectrometry technology to simultaneously measure the levels, synthesis, and turnover of hundreds of proteins associated with pathways of importance to aging, e.g., metabolism, antioxidant defense system, proteostasis, and mitochondria function. The Genomic Sciences Core uses novel next-generation sequencing that allows investigators to study the effect of age, or anti-aging manipulations, on DNA methylation, mitochondrial genome heteroplasmy, and the transcriptome of single cells. The Geroscience Redox Biology Core provides investigators with a comprehensive state-of-the-art assessment of the oxidative stress status of a cell, e.g., measures of oxidative damage and redox couples, which are important in aging as well as many major age-related diseases as well as assays of mitochondrial function. The GeroInformatics Core provides investigators assistance with data analysis, which includes both statistical support as well as analysis of large datasets. The Core also has developed number of unique software packages to help with interpretation of results and discovery of new leads relevant to aging. In addition, the Geropathology Research Resource in the Program Enhancement Core provides investigators with pathological assessments of mice using the recently developed Geropathology Grading Platform.
© 2021. American Aging Association.

Entities:  

Keywords:  Genomic Sciences Core; Geropathology Grading Platform; Geroscience

Mesh:

Year:  2021        PMID: 34606039      PMCID: PMC8599778          DOI: 10.1007/s11357-021-00454-7

Source DB:  PubMed          Journal:  Geroscience        ISSN: 2509-2723            Impact factor:   7.713


  59 in total

1.  GenomeRunner: automating genome exploration.

Authors:  Mikhail G Dozmorov; Lukas R Cara; Cory B Giles; Jonathan D Wren
Journal:  Bioinformatics       Date:  2011-12-06       Impact factor: 6.937

2.  Reproducibility crisis: Blame it on the antibodies.

Authors:  Monya Baker
Journal:  Nature       Date:  2015-05-21       Impact factor: 49.962

3.  Predictive bioinformatics identifies novel regulators of proliferation in a cancer stem cell model.

Authors:  Evan Fields; Jonathan D Wren; Constantin Georgescu; John R Daum; Gary J Gorbsky
Journal:  Stem Cell Res       Date:  2017-11-21       Impact factor: 2.020

4.  GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets.

Authors:  Mikhail G Dozmorov; Lukas R Cara; Cory B Giles; Jonathan D Wren
Journal:  Bioinformatics       Date:  2016-04-01       Impact factor: 6.937

Review 5.  The Aging Epigenome.

Authors:  Lauren N Booth; Anne Brunet
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

6.  The most popular genes in the human genome.

Authors:  Elie Dolgin
Journal:  Nature       Date:  2017-11-23       Impact factor: 49.962

7.  Olfactomedin 4 defines a subset of human neutrophils.

Authors:  Stine N Clemmensen; Christina T Bohr; Sara Rørvig; Andreas Glenthøj; Helena Mora-Jensen; Elisabeth P Cramer; Lars C Jacobsen; Maria T Larsen; Jack B Cowland; Julia T Tanassi; Niels H H Heegaard; Jonathan D Wren; Asli N Silahtaroglu; Niels Borregaard
Journal:  J Leukoc Biol       Date:  2011-12-20       Impact factor: 4.962

8.  Detection of protein carbonyls in aging liver tissue: A fluorescence-based proteomic approach.

Authors:  Asish R Chaudhuri; Eric M de Waal; Anson Pierce; Holly Van Remmen; Walter F Ward; Arlan Richardson
Journal:  Mech Ageing Dev       Date:  2006-09-26       Impact factor: 5.432

9.  Denervation induces cytosolic phospholipase A2-mediated fatty acid hydroperoxide generation by muscle mitochondria.

Authors:  Arunabh Bhattacharya; Florian L Muller; Yuhong Liu; Marian Sabia; Hanyu Liang; Wook Song; Youngmok C Jang; Qitao Ran; Holly Van Remmen
Journal:  J Biol Chem       Date:  2008-11-10       Impact factor: 5.157

10.  Methods for defining distinct bioenergetic profiles in platelets, lymphocytes, monocytes, and neutrophils, and the oxidative burst from human blood.

Authors:  Balu K Chacko; Philip A Kramer; Saranya Ravi; Michelle S Johnson; Robert W Hardy; Scott W Ballinger; Victor M Darley-Usmar
Journal:  Lab Invest       Date:  2013-03-25       Impact factor: 5.662

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