Literature DB >> 34596864

Application of CRISPR-Cas9 based gene editing to study the pathogenesis of colon and liver cancer using organoids.

Gayatri Ramakrishna1, Preedia E Babu2, Ravinder Singh2, Nirupma Trehanpati2.   

Abstract

Two breakthrough techniques that have totally revolutionized biology in last 1 decade are the discovery of genome editing tools and growing the stem cells/primary tissue explants in defined 3D culture. In this regard the discovery of CRISPR-Cas9 as a specific gene editing tool and organoid culture from adult stem cell has provided easy handy tools to uncover the process of organ development and also modeling cancer. Genetically modified organoids have been developed by sequential knockout and knockin of driver mutations by genome editing followed by niche-based selection. The modified organoids when xenotransplanted in animal models faithfully recapitulate the neoplastic events of human tumors. The present review focuses on the merging of these two powerful technologies in understanding the complexities of colon and liver cancer.
© 2021. Asian Pacific Association for the Study of the Liver.

Entities:  

Keywords:  CRISPR-Cas9; Cancer; Colon; Liver; Organoids

Mesh:

Year:  2021        PMID: 34596864     DOI: 10.1007/s12072-021-10237-z

Source DB:  PubMed          Journal:  Hepatol Int        ISSN: 1936-0533            Impact factor:   6.047


  34 in total

1.  What history tells us XXXIX. CRISPR-Cas: From a prokaryotic immune system to a universal genome editing tool.

Authors:  Michel Morange
Journal:  J Biosci       Date:  2015-12       Impact factor: 1.826

2.  Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements.

Authors:  Francisco J M Mojica; César Díez-Villaseñor; Jesús García-Martínez; Elena Soria
Journal:  J Mol Evol       Date:  2005-02       Impact factor: 2.395

3.  Nucleic acid detection with CRISPR-Cas13a/C2c2.

Authors:  Jonathan S Gootenberg; Omar O Abudayyeh; Jeong Wook Lee; Patrick Essletzbichler; Aaron J Dy; Julia Joung; Vanessa Verdine; Nina Donghia; Nichole M Daringer; Catherine A Freije; Cameron Myhrvold; Roby P Bhattacharyya; Jonathan Livny; Aviv Regev; Eugene V Koonin; Deborah T Hung; Pardis C Sabeti; James J Collins; Feng Zhang
Journal:  Science       Date:  2017-04-13       Impact factor: 47.728

Review 4.  Lessons from hereditary colorectal cancer.

Authors:  K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1996-10-18       Impact factor: 41.582

5.  Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product.

Authors:  Y Ishino; H Shinagawa; K Makino; M Amemura; A Nakata
Journal:  J Bacteriol       Date:  1987-12       Impact factor: 3.490

6.  Preserved genetic diversity in organoids cultured from biopsies of human colorectal cancer metastases.

Authors:  Fleur Weeber; Marc van de Wetering; Marlous Hoogstraat; Krijn K Dijkstra; Oscar Krijgsman; Thomas Kuilman; Christa G M Gadellaa-van Hooijdonk; Daphne L van der Velden; Daniel S Peeper; Edwin P J G Cuppen; Robert G Vries; Hans Clevers; Emile E Voest
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

7.  Transcription at different salinities of Haloferax mediterranei sequences adjacent to partially modified PstI sites.

Authors:  F J Mojica; G Juez; F Rodríguez-Valera
Journal:  Mol Microbiol       Date:  1993-08       Impact factor: 3.501

8.  Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin.

Authors:  Alexander Bolotin; Benoit Quinquis; Alexei Sorokin; S Dusko Ehrlich
Journal:  Microbiology       Date:  2005-08       Impact factor: 2.777

9.  Prospective derivation of a living organoid biobank of colorectal cancer patients.

Authors:  Marc van de Wetering; Hayley E Francies; Joshua M Francis; Gergana Bounova; Francesco Iorio; Apollo Pronk; Winan van Houdt; Joost van Gorp; Amaro Taylor-Weiner; Lennart Kester; Anne McLaren-Douglas; Joyce Blokker; Sridevi Jaksani; Sina Bartfeld; Richard Volckman; Peter van Sluis; Vivian S W Li; Sara Seepo; Chandra Sekhar Pedamallu; Kristian Cibulskis; Scott L Carter; Aaron McKenna; Michael S Lawrence; Lee Lichtenstein; Chip Stewart; Jan Koster; Rogier Versteeg; Alexander van Oudenaarden; Julio Saez-Rodriguez; Robert G J Vries; Gad Getz; Lodewyk Wessels; Michael R Stratton; Ultan McDermott; Matthew Meyerson; Mathew J Garnett; Hans Clevers
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

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  2 in total

Review 1.  Tumor organoids: applications in cancer modeling and potentials in precision medicine.

Authors:  Hanxiao Xu; Dechao Jiao; Aiguo Liu; Kongming Wu
Journal:  J Hematol Oncol       Date:  2022-05-12       Impact factor: 23.168

Review 2.  In vitro models for head and neck cancer: Current status and future perspective.

Authors:  Christian R Moya-Garcia; Hideaki Okuyama; Nader Sadeghi; Jianyu Li; Maryam Tabrizian; Nicole Y K Li-Jessen
Journal:  Front Oncol       Date:  2022-08-03       Impact factor: 5.738

  2 in total

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