Literature DB >> 34590817

The Enzymatic Activity of Inosine 5'-Monophosphate Dehydrogenase May Not Be a Vulnerable Target for Staphylococcus aureus Infections.

Gyan Modi1, Gary M Marqus2, Mohana Rao Vippila3, Deviprasad R Gollapalli1, Youngchang Kim4,5, Adhar C Manna6, Shibin Chacko1, Natalia Maltseva4,5, Xingyou Wang2, Ryan T Cullinane7, Yubo Zhang7, Judy L M Kotler8, Petr Kuzmic9, Minjia Zhang1, Ann P Lawson1, Andrzej Joachimiak4,5,10, Ambrose Cheung6, Barry B Snider11, David M Rothstein12, Gregory D Cuny3, Lizbeth Hedstrom1,11.   

Abstract

Many bacterial pathogens, including Staphylococcus aureus, require inosine 5'-monophosphate dehydrogenase (IMPDH) for infection, making this enzyme a promising new target for antibiotics. Although potent selective inhibitors of bacterial IMPDHs have been reported, relatively few have displayed antibacterial activity. Here we use structure-informed design to obtain inhibitors of S. aureus IMPDH (SaIMPDH) that have potent antibacterial activity (minimal inhibitory concentrations less than 2 μM) and low cytotoxicity in mammalian cells. The physicochemical properties of the most active compounds were within typical Lipinski/Veber space, suggesting that polarity is not a general requirement for achieving antibacterial activity. Five compounds failed to display activity in mouse models of septicemia and abscess infection. Inhibitor-resistant S. aureus strains readily emerged in vitro. Resistance resulted from substitutions in the cofactor/inhibitor binding site of SaIMPDH, confirming on-target antibacterial activity. These mutations decreased the binding of all inhibitors tested, but also decreased catalytic activity. Nonetheless, the resistant strains had comparable virulence to wild-type bacteria. Surprisingly, strains expressing catalytically inactive SaIMPDH displayed only a mild virulence defect. Collectively these observations question the vulnerability of the enzymatic activity of SaIMPDH as a target for the treatment of S. aureus infections, suggesting other functions of this protein may be responsible for its role in infection.

Entities:  

Keywords:  IMPDH; antibiotic space; guaB; guanine nucleotide biosynthesis; target vulnerability; virulence

Mesh:

Substances:

Year:  2021        PMID: 34590817      PMCID: PMC9575405          DOI: 10.1021/acsinfecdis.1c00342

Source DB:  PubMed          Journal:  ACS Infect Dis        ISSN: 2373-8227            Impact factor:   5.578


  56 in total

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Authors:  Lizbeth Hedstrom
Journal:  ACS Infect Dis       Date:  2016-11-09       Impact factor: 5.084

2.  Benzoxazoles, Phthalazinones, and Arylurea-Based Compounds with IMP Dehydrogenase-Independent Antibacterial Activity against Francisella tularensis.

Authors:  Suresh Kumar Gorla; Yan Zhang; Meaghan M Rabideau; Aiping Qin; Shibin Chacko; Amanda L House; Corey R Johnson; Kavitha Mandapati; Hannah M Bernstein; Elizabeth S McKenney; Helena Boshoff; Minjia Zhang; Ian J Glomski; Joanna B Goldberg; Gregory D Cuny; Barbara J Mann; Lizbeth Hedstrom
Journal:  Antimicrob Agents Chemother       Date:  2017-09-22       Impact factor: 5.191

Review 3.  Evolving medicinal chemistry strategies in antibiotic discovery.

Authors:  Andrew C Pawlowski; Jarrod W Johnson; Gerard D Wright
Journal:  Curr Opin Biotechnol       Date:  2016-04-24       Impact factor: 9.740

4.  Fragment-to-hit-to-lead discovery of a novel pyridylurea scaffold of ATP competitive dual targeting type II topoisomerase inhibiting antibacterial agents.

Authors:  Gregory S Basarab; John I Manchester; Shanta Bist; P Ann Boriack-Sjodin; Brian Dangel; Ruth Illingworth; Brian A Sherer; Shubha Sriram; Maria Uria-Nickelsen; Ann E Eakin
Journal:  J Med Chem       Date:  2013-10-29       Impact factor: 7.446

5.  High-performance liquid chromatographic methods for base and nucleoside analysis in extracellular fluids and in cells.

Authors:  R J Simmonds; R A Harkness
Journal:  J Chromatogr       Date:  1981-12-11

6.  Structure of Cryptosporidium IMP dehydrogenase bound to an inhibitor with in vivo antiparasitic activity.

Authors:  Youngchang Kim; Magdalena Makowska-Grzyska; Suresh Kumar Gorla; Deviprasad R Gollapalli; Gregory D Cuny; Andrzej Joachimiak; Lizbeth Hedstrom
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-04-21       Impact factor: 1.056

7.  Synthesis, in vitro evaluation and cocrystal structure of 4-oxo-[1]benzopyrano[4,3-c]pyrazole Cryptosporidium parvum inosine 5'-monophosphate dehydrogenase (CpIMPDH) inhibitors.

Authors:  Zhuming Sun; Jihan Khan; Magdalena Makowska-Grzyska; Minjia Zhang; Joon Hyung Cho; Chalada Suebsuwong; Pascal Vo; Deviprasad R Gollapalli; Youngchang Kim; Andrzej Joachimiak; Lizbeth Hedstrom; Gregory D Cuny
Journal:  J Med Chem       Date:  2014-12-04       Impact factor: 7.446

8.  Metabolite concentrations, fluxes and free energies imply efficient enzyme usage.

Authors:  Junyoung O Park; Sara A Rubin; Yi-Fan Xu; Daniel Amador-Noguez; Jing Fan; Tomer Shlomi; Joshua D Rabinowitz
Journal:  Nat Chem Biol       Date:  2016-05-02       Impact factor: 15.040

9.  Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis.

Authors:  Michael A DeJesus; Elias R Gerrick; Weizhen Xu; Sae Woong Park; Jarukit E Long; Cara C Boutte; Eric J Rubin; Dirk Schnappinger; Sabine Ehrt; Sarah M Fortune; Christopher M Sassetti; Thomas R Ioerger
Journal:  MBio       Date:  2017-01-17       Impact factor: 7.867

10.  Genome-wide identification of Acinetobacter baumannii genes necessary for persistence in the lung.

Authors:  Nengding Wang; Egon A Ozer; Mark J Mandel; Alan R Hauser
Journal:  MBio       Date:  2014-06-03       Impact factor: 7.867

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  1 in total

Review 1.  Compartmentalization and regulation of GTP in control of cellular phenotypes.

Authors:  David W Wolff; Anna Bianchi-Smiraglia; Mikhail A Nikiforov
Journal:  Trends Mol Med       Date:  2022-06-16       Impact factor: 15.272

  1 in total

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