| Literature DB >> 34589430 |
Zihan Wei1,2, Ziyang Wang1,2, Yuntao Nie1, Kai Zhang1, Haifeng Shen1, Xin Wang1,2, Manqi Wu1,2, Fan Yang1, Kezhong Chen1.
Abstract
BACKGROUND AND AIMS: Nodular ground-glass lesions have become increasingly common with the increased use of computed tomography (CT), while the genomic features of ground-glass opacities (GGOs) remain unclear. This study aims to comprehensively investigate the molecular alterations of GGOs and their correlation with radiological progression.Entities:
Keywords: EGFR; PD-L1; ground-glass-opacity; lung cancer; molecular alteration; systematic review
Year: 2021 PMID: 34589430 PMCID: PMC8475014 DOI: 10.3389/fonc.2021.724692
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Process of study selection. (A) Study selection with genetic alterations. (B) Study selection with PD-L1 expressions.
Characters of the studies included in the meta-analysis.
| Study ID | Region | Cohort size | Method_gene | Genes tested | EGFR mutation rate | |
|---|---|---|---|---|---|---|
| Zhao et al. ( | Chinese | 529 | qPCR & Immunohistochemical | EGFR、KRAS、HER2、ALK、BRAF、RET、ROS1、PIK3CA、NRAS | 54.82% | |
| Aoki et al. ( | Japanese | 25 | PCR | EGFR、KRAS | 40.00% | |
| Dai et al. ( | Chinese | 204 | qPCR | EGFR | 53.43% | |
| Suda et al. ( | Japanese | 1871 | unclear | EGFR | 50.61% | |
| Min et al. ( | Chinese | 338 | direct dideoxynucleotide sequencing | EGFR | 64.79% | |
| Zou et al. ( | Chinese | 209 | PCR | EGFR | 73.68% | |
| Sugano et al. ( | Japanese | 59 | non-radioactive single-strand conformation polymorphism | EGFR、KRAS | 49.15% | |
| Liu et al. ( | Chinese | 78 | qPCR | EGFR | 33.33% | |
| Yang et al. ( | Chinese | 158 | qPCR | EGFR、KRAS、ALK | 62.66% | |
| Lu et al. ( | Chinese | 156 | qPCR | EGFR | 48.08% | |
| Chung et al. ( | Korean | 24 | nested PCR | EGFR | 41.07% | |
| Hsu et al. ( | Chinese | 67 | PCR | EGFR | 55.22% | |
| Ko et al. ( | Korean | 215 | PCR | EGFR、ALK | 54.63% | |
| Tomita et al. ( | Japanese | 68 | PCR | EGFR | 72.06% | |
| Chen et al. ( | Chinese | 39 | DNA sequencing | EGFR、KRAS、BRAF、PIK3CA、TP53、ALK、ROS1、RET | 56.52% | |
| Kobayashi et al. ( | Japanese | 96 | reverse transcriptase-PCR | EGFR、KRAS、ALK、HER2 | 64.42% | |
| Li et al. ( | Chinese | 120 | WES* | 50.00% | ||
| Ren et al. ( | Chinese | 31 | PCR & WES* | 17.39% | ||
| Wang et al. ( | Chinese | 212 | PCR | EGFR、KRAS | 36.79% | |
| Usuda et al. ( | Japanese | 56 | Cycleave PCR | EGFR | 67.86% | |
| Lui et al. ( | Asian & Caucasian | 224 | unclear | EGFR、KRAS | 32.59% | |
| Hong et al. ( | Korean | 116 | PCR | EGFR | 56.03% | |
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| Wu et al. ( | Chinese | 233 | E1L3N | 5% | 14.16% | |
| Suda et al. ( | Japanese | 45 | E1L3N | 1% | 4.44% | |
| Toyokawa et al. ( | Japanese | 189 | SP142 | 5% | 9.52% | |
| Zhao et al., 2018 ( | Chinese | 328 | 28-8, SP142, E1L3N, BP6001 | 5% | 6.40% | |
*Whole exosome sequencing or next generation sequencing was used in the research lots of alterations reported, so the genes tested were omitted.
PCR, polymerase chain reaction; qPCR, quantitative polymerase chain reaction; NGS, next generation sequencing; WES, whole-exosome sequencing.
Figure 2Forest plots from the meta-analysis of published gene alterations in GGOs. (A) The pooled estimated rate of the EGFR mutation in 22 articles. (B) The pooled estimated rate of the KRAS mutation in 10 articles. (C) The pooled estimated rate of the ALK rearrangement in four articles. (D) The pooled estimated rate of the PD-L1 expression in four articles.
Figure 3Subgroup analysis for the EGFR mutations. (A) The distribution of the EGFR gene mutation rates in the subgroups with a different radiological density. (B) The distribution of sGGOs in the subgroups with a different status of EGFR mutation. (C) Forest plots from the subgroup meta-analysis of EGFR alterations in GGOs with different radiological subtypes. (D) Forest plots from the subgroup meta-analysis of the percentage of sGGOs in GGOs with a different status of EGFR mutation. gGGO, ground-glass dominant GGO; 50%
Details of the radiological subgroup analysis for the EGFR mutation and KRAS mutation by the random effect model.
| EGFR | G/T ratio* | mut/total (n = 10) | Pooled estimated | 95%CI | Heterogeneity |
| P-value | |
|---|---|---|---|---|---|---|---|---|
| I2 | P-value | |||||||
| gGGO | 624/1,298 (n = 10) | 47.40% | 38.48%–56.40% | 83% | <0.01 | 0.7018 | 0.4828 | |
| sGGO | 716/1,407 (n = 8) | 51.94% | 45.15%–58.69% | 58% | 0.02 | |||
| EGFR mut | sGGO/gGGO | pooled | 95%CI | Heterogeneity |
| P-value | ||
| I2 | P-value | |||||||
| EGFR (+) | 716/1,263 (n = 8) | 53.85% | 44.01%–63.54% | 81% | <0.01 | 0.6554 | 0.5122 | |
| EGFR (–) | 691/1,313 (n = 8) | 47.17% | 33.68%–60.86% | 92% | <0.01 | |||
| KRAS | G/T ratio* | mut/total (n = 5) | pooled estimated | 95%CI | Heterogeneity |
| P-value | |
| I2 | P-value | |||||||
| gGGO | 14/309 (n = 5) | 3.42% | 1.35%–6.13% | 0% | 0.50 | 1.8075 | 0.0707 | |
| sGGO | 19/137 (n = 3) | 12.27% | 3.89%–23.96% | 66% | 0.05 | |||
*G/T ratio: gGGO, ground-glass dominant GGO; 0
#Z-value was calculated by Z-test, p < 0.05 is considered statistically significant.
Gene mutations in synchronous multiple ground-glass nodules (SMGGNs).TABLE 3A Data extracted from four articles which showed the gene alterations among multicentric SMGGNs.
| Author (year) | Gene_targeted | Amount | Leision_1 | Leision_2 | Leision_3 | Leision_4 | Leision_5 |
|---|---|---|---|---|---|---|---|
| Liu, M ( | EGFR | 10 | EGFR 19del | wild# | |||
| 10 | EGFR L858R | wild | |||||
| 8 | EGFR L858R | EGFR 19del | |||||
| 1 | EGFR 19del | wild | |||||
| 1 | EGFR 19del | EGFR L858R | |||||
| 1 | EGFR 19del | EGFR G719S | |||||
| 1 | EGFR S768I | wild | |||||
| 1 | EGFR L858R | EGFR 19del | |||||
| 1 | EGFR L861Q | wild | |||||
| 1 | EGFR L858R | EGFR L858R/19del | |||||
| Chung, J. H ( | EGFR、KRAS | 9 | EGFR 19del | wild | |||
| 6 | wild | wild | |||||
| 4 | EGFR 19del | EGFR L858R | |||||
| 1 | EGFR 19del/KRAS | wild | |||||
| 1 | EGFR 19del/F712L | wild | |||||
| 1 | EGFR L858R | wild | |||||
| 1 | EGFR L858R | G724S/L861Q | |||||
| 1 | KRAS | wild | |||||
| Chen, K ( | EGFR、KRAS、BRAF、TP53、ALK、ROS1、RET | 1 | EGFR others/TP53 | wild | |||
| 1 | EGFR L858R | BRAF | |||||
| 1 | EGFR L858R | wild | |||||
| 1 | EGFR L858R/19del | wild | |||||
| 1 | KRAS | wild | |||||
| 1 | ROS1 | wild | |||||
| Li, Y ( | EGFR、KRAS、BRAF、TP53、ALK* | 4 | others | others | |||
| 3 | KRAS | others | |||||
| 3 | others | others | others | ||||
| 2 | EGFR | others | |||||
| 2 | EGFR | EGFR | |||||
| 2 | EGFR/TP53 | EGFR | |||||
| 1 | EGFR/TP53 | others | |||||
| 1 | EGFR/TP53 | ALK | |||||
| 1 | EGFR | ROS1 | |||||
| 1 | others | others | others | others | others | ||
| 1 | EGFR | EGFR | others | ||||
| 1 | EGFR | EGFR | EGFR | ||||
| 1 | EGFR/TP53 | others | others |
*whole exosome sequencing was used and the data showed only some specific gene alterations.
#wild means no target gene alteration was found in the research.
Three cases confirmed by Li, Y (25). which applied WES to analyze gene alterations in their research.
| Author(year) | Method | Gene | Gene_alterations |
|---|---|---|---|
| Li, Y ( | WES | patient_1 | EGFR/others |
| patient_2 | EGFR/TP53/others | ||
| patient_3 | EGFR/TP53/others |