| Literature DB >> 34581777 |
Kate Downes1,2,3, Xuefei Zhao4,5, Nicholas S Gleadall1,2, Harriet McKinney1,2, Carly Kempster1,2, Joana Batista1,2, Patrick L Thomas1,2, Matthew Cooper4, James V Michael4, Roman Kreuzhuber1,6, Katherine Wedderburn1,2, Kathryn Waller1,2, Bianca Varney1,2, Hippolyte Verdier1, Neline Kriek7, Sofie E Ashford1,8, Kathleen E Stirrups1,8, Joanne L Dunster7, Steven E McKenzie4, Willem H Ouwehand1,2,9, Jonathan M Gibbins7, Jing Yang10, William J Astle2,11, Peisong Ma4.
Abstract
The interindividual variation in the functional response of platelets to activation by agonists is heritable. Genome-wide association studies (GWASs) of quantitative measures of platelet function have identified fewer than 20 distinctly associated variants, some with unknown mechanisms. Here, we report GWASs of pathway-specific functional responses to agonism by adenosine 5'-diphosphate, a glycoprotein VI-specific collagen mimetic, and thrombin receptor-agonist peptides, each specific to 1 of the G protein-coupled receptors PAR-1 and PAR-4, in subsets of 1562 individuals. We identified an association (P = 2.75 × 10-40) between a common intronic variant, rs10886430, in the G protein-coupled receptor kinase 5 gene (GRK5) and the sensitivity of platelets to activate through PAR-1. The variant resides in a megakaryocyte-specific enhancer that is bound by the transcription factors GATA1 and MEIS1. The minor allele (G) is associated with fewer GRK5 transcripts in platelets and the greater sensitivity of platelets to activate through PAR-1. We show that thrombin-mediated activation of human platelets causes binding of GRK5 to PAR-1 and that deletion of the mouse homolog Grk5 enhances thrombin-induced platelet activation sensitivity and increases platelet accumulation at the site of vascular injury. This corroborates evidence that the human G allele of rs10886430 is associated with a greater risk for cardiovascular disease. In summary, by combining the results of pathway-specific GWASs and expression quantitative trait locus studies in humans with the results from platelet function studies in Grk5-/- mice, we obtain evidence that GRK5 regulates the human platelet response to thrombin via the PAR-1 pathway.Entities:
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Year: 2022 PMID: 34581777 PMCID: PMC9006276 DOI: 10.1182/bloodadvances.2021005453
Source DB: PubMed Journal: Blood Adv ISSN: 2473-9529
Figure 1.Genome-wide associations with platelet reactivity. Manhattan plot showing the P values of tests for association between genetic variants and each of 4 phenotypes measuring the reactivity of platelets to agonism by ADP, CRP-XL, PAR-1, and PAR-4 in the Cambridge PFC. Each dot corresponds to a genetic variant in the Haplotype Reference Consortium r1.1 reference panel. The position on the x-axis indicates the physical position of the variant; the position on the y-axis indicates the -log10 P value of a Wald test for association from a linear mixed-model (on a log scale). Only variants with an imputation INFO score > 0.6 and a P value < .1 are shown. The horizontal dashed line corresponds to the genome-wide significance threshold (5 × 10−8). The red dots correspond to the variants showing the strongest evidence for association in those loci containing significantly associated variants. The red gene names indicate the gene causally mediating each of these associations.
Summary statistics for platelet-reactivity genome wide association study (<5 × 10−8)
| Phenotype | Variant ID | Chr | Position | Predicted consequence | Ref. allele | Alt. allele | Alt. allele frequency | n | Effect size | SE |
| Nearest gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ADP | rs12566888 | 1 | 156 869 047 | Intronic variant | G | T | 0.09 | 1341 | −0.391 | 0.0706 | 3.184 × 10−8 |
|
| ADP | rs7624918 | 3 | 56 901 292 | Intronic variant | C | T | 0.34 | 1341 | 0.284 | 0.0434 | 5.75 × 10−11 |
|
| CRP-XL | rs1613662 | 19 | 55 536 595 | Nonsynonymous variant | G | A | 0.83 | 1329 | 0.923 | 0.0432 | 5.01 × 10−101 |
|
| PAR-4 | rs773902 | 19 | 17 000 632 | Nonsynonymous variant | G | A | 0.20 | 550 | 0.515 | 0.0698 | 1.66 × 10−13 |
|
| PAR-1 | rs10886430 | 10 | 121 010 256 | Intronic variant | A | G | 0.13 | 546 | 1.09 | 0.0821 | 2.75 × 10−40 |
|
Coordinates are based on GRCh37. Predicted consequences are based on GP6 transcript NM_001083899.2 and PAR-4 transcript NM_003950.4
Alt., alternative; Chr, chromosome; Ref., reference.
Figure 2.Increased platelet reactivity via PAR-1 at rs10886430 is due to decreased expression of GRK5. Box plots showing the relationships between the genotype of rs10886430 and the reactivity of platelets to PAR-1 (after adjustment for covariates) in 546 participants in the Cambridge PFC (A) and platelet expression of GRK5 measured using probe ID:3190239 of the Illumina HumanHT-12 v4.0 Expression BeadChip microarray in 388 donors (B), after adjustment for technical variation. The thick horizontal bars indicate the median of each conditional distribution and the lower and upper hinges indicate the 25th and 75th percentiles, respectively, of each distribution. The whiskers extend no further than 1.5 interquartile ranges from the hinges. (C) The genetic association between PAR-1 reactivity and rs10886430 in intron 1 of GRK5 colocalizes with the binding of the transcription factors GATA-1 and MEIS1 in human MKs and an enhancer specific to the human MK blood cell lineage. Top to bottom: the strength of evidence for the association between genetic variants in the GRK5 locus and PAR-1 reactivity, measured by −log10(P value); the binding sites of the transcription factors GATA-1, RUNX1, FLI1, and MEIS1 in human MKs; ATAC-seq read depth indicating regions of open chromatin in human MKs; ChIP-seq read depth measuring the histone modifications H3K4me1, HSK4me3, and H3K27ac in human MKs; human MK enhancer sites inferred from the ATAC-seq and ChIP-seq data; and a model of the GRK5 gene with exons indicated by rectangles.
Figure 3.Activation of platelets with thrombin increases GRK5 and PAR-1 binding in human platelets. (A) Resting human platelets or thrombin (1 U/mL)-activated platelets were prepared and lysed. Proteins were precipitated with an anti–PAR-1 (ATAP-2) antibody or control immunoglobulin (Ig) and then probed with anti-GRK5 antibody and reprobed with an anti–PAR-1 antibody (n = 6). (B) Lysates from resting or activated platelets were precipitated with an anti-GRK5 antibody or Ig and probed with anti–PAR-1 before reprobing with anti-GRK5 (n = 3). IB, immunoblotting; IP, immunoprecipitation; ns, not significant.
Figure 4.Increased integrin activation, α-granule exocytosis, aggregation, and ATP release in platelets from (A) Platelets from Grk5−/− and littermate control (WT) mice were stained with antibodies to activate ɑIIbβ3 (Jon/A; left panel) or P-selectin (right panel) and measured by flow cytometry. Platelets were stimulated with Par-4–AP (AYPGKF) (n = 3). Platelet reactivity in response to Par-4–AP (n = 5) (B), representative aggregation traces (C), and summarized data (D) for platelets stimulated with thrombin (mean ± SEM; n = 3-6 mice at each tested concentration). (E) ATP release for platelets from Grk5−/− and littermate control mice (WT) stimulated with Par-4–AP (AYPGKF). The results of 3 experiments (mean ± SEM) are summarized. MFI, mean fluorescence intensity; ns, not significant.
Figure 5.Increased platelet accumulation at the site of vascular injury in (A) Platelet accumulation was visualized by CD41 staining after laser injuries in cremaster muscle arterioles and recorded using confocal intravital fluorescence microscopy. (B) Area under CD41 vs time curve. (C) Peak of the CD41+ area at 180 seconds after injury. Bar graph (D) and dot plots (E) showing CD41 deposition at 180 seconds after injury. All data are mean ± SEM; 36 injuries in 3 WT mice and 36 injuries in 4 Grk5−/− mice. (F) Representative images of anti-GPIX–labeled thrombi in lungs harvested from WT and Grk5−/− mice. Images were acquired using the Odyssey LiCor imaging system. (G) Thrombosis score, representing the mean thrombus area and number of thrombi, for 8 WT mice vs 8 Grk5−/− mice. Group means were compared using the Student t test; P ≤ .05 was considered statistically significant. AUC, area under the curve; NS, not significant.