| Literature DB >> 34573390 |
Juan Carlos Gomez-Verjan1, Marcelino Esparza-Aguilar2, Verónica Martín-Martín3, Cecilia Salazar-Perez2, Cinthya Cadena-Trejo1, Luis Miguel Gutierrez-Robledo4, José Jaime Martínez-Magaña5, Humberto Nicolini5, Pedro Arroyo1.
Abstract
Adverse conditions in early life, including environmental, biological and social influences, are risk factors for ill-health during aging and the onset of age-related disorders. In this context, the recent field of social epigenetics offers a valuable method for establishing the relationships among them However, current clinical studies on environmental changes and lifespan disorders are limited. In this sense, the Tlaltizapan (Mexico) cohort, who 52 years ago was exposed to infant malnutrition, low income and poor hygiene conditions, represents a vital source for exploring such factors. Therefore, in the present study, 52 years later, we aimed to explore differences in clinical/biochemical/anthropometric and epigenetic (DNA methylation) variables between individuals from such a cohort, in comparison with an urban-raised sample. Interestingly, only cholesterol levels showed significant differences between the cohorts. On the other hand, individuals from the Tlaltizapan cohort with more years of schooling had a lower epigenetic age in the Horvath (p-value = 0.0225) and PhenoAge (p-value = 0.0353) clocks, compared to those with lower-level schooling. Our analysis indicates 12 differentially methylated sites associated with the PI3-Akt signaling pathway and galactose metabolism in individuals with different durations of schooling. In conclusion, our results suggest that longer durations of schooling could promote DNA methylation changes that may reduce epigenetic age; nevertheless, further studies are needed.Entities:
Keywords: aging; epigenetic age; epigenetics; epigenome-wide association study; years of schooling
Mesh:
Year: 2021 PMID: 34573390 PMCID: PMC8469534 DOI: 10.3390/genes12091408
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Clinical, biochemical, and epigenetic variables.
| Tlaltizapan Cohort ( | Urban Raised ( | Stat ( | |
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| Gender | |||
| Female | 19 (59.37) | 5 (71.43) | 0.03 (0.8690) |
| Male | 13 (40.63) | 2 (28.57) | 0.03 (0.8690) |
| Years of schooling | 10.31 (3.55) | 13.86 (8.99) | 1.03 (0.3421) |
| BMI | 29.35 (4.61) | 29.12 (4.61) | −0.12 (0.9063) |
| Visceral fat | 3.09 (1.01) | 3.17 (0.86) | 0.21 (0.8379) |
| Biochemical variables | |||
| Glucose | 108.34 (49.87) | 125.43 (69.01) | 0.62 (0.5535) |
| Triglycerides | 212.59 (210.05) | 230.71 (190.92) | 0.22 (0.8281) |
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| HDL | 44.07 (12.84) | 45.81 (12.09) | 0.34 (0.7400) |
| LDL | 111.98 (38.60) | 144.30 (44.98) | 1.76 (0.1155) |
| Creatinine | 0.64 (0.18) | 0.71 (0.14) | 1.15 (0.2763) |
| Uric Acid | 5.62 (0.65) | 5.21 (1.42) | −1.17 (0.2535) |
| Prealbumine | 24.92 (9.53) | 28.82 (5.61) | 1.37 (0.1970) |
| Reactive Protein C | 0.40 (0.17) | 0.38 (0.08) | −0.55 (0.5935) |
| Transferrine | 247.76 (87.39) | 276.40 (42.01) | 1.24 (0.2341) |
| Glycosylated Haemoglobin | 6.45 (1.77) | 5.73 (1.22) | −1.22 (0.2525) |
| Fibrinogen | 330.75 (50.13) | 353.83 (24.79) | 1.71 (0.1078) |
| Iron Fixing | 357.06 (60.39) | 388.67 (78.15) | 0.94 (0.3828) |
| Mental Health | |||
| Mini-mental | 25.56 (2.65) | 26.42 (1.81) | 1.04 (0.3167) |
| Depression | 6 (18.75) | 2 (28.57) | 0.00 (0.9472) |
| Drugs | 9 (28.13) | 5 (71.43) | 5.18 (0.1591) |
| Tobacco Index | 1.50 (5.45) | 0.86 (1.18) | −0.61 (0.5477) |
| Alcohol | 28 (87.50) | 4 (57.14) | 1.83 (0.1763) |
| Epigenetic Clocks | |||
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| Horvath acceleration | −0.14 (3.56) | 0.71 (4.24) | 0.47 (0.6579) |
| Hannum | 56.77 (4.02) | 60.16 (5.40) | 1.75 (0.1096) |
| Hannum acceleration | 0.05 (3.60) | −0.25 (4.45) | −0.15 (0.8814) |
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| PhenoAge acceleration | 0.11 (6.64) | −0.58 (4.02) | −0.34 (0.7383) |
Note. Bold represents statistically significant differences (not adjusted for the multiple tests).
Figure 1Correlation matrix of the epigenetic clocks and the chronological age. Note: The correlation was performed in both cohorts, Tlaltizapan and urban-raised, and collapsed. Blue colors represent a positive correlation, and red colors represent a negative correlation. The square size signifies the p-value of the correlation (the significance is directly proportional to the square size; all the correlations were statistically significant (p-value < 0.05).
Figure 2Differences between individuals with epigenetic age acceleration and years of schooling. Note: Blue colors represent individuals with no acceleration on epigenetic clocks, and red represents individuals with accelerated epigenetic aging.
Epigenome-wide nominal associations between high and low duration of schooling.
| 1 Position | CpG Site | 2 LogFC | High Avg | Low Avg | Gene | 3 Gene Loc | CGI 4 | |
|---|---|---|---|---|---|---|---|---|
| 2:38496264 | cg19269093 | −0.0453 | 2.1563 × 10−5 | 0.8747 | 0.8294 | IGR | OpenSea | |
| 2:136595281 | cg04750100 | −0.0892 | 2.5258 × 10−5 | 0.4171 | 0.3279 |
| TSS1500 | OpenSea |
| 2:237163447 | cg25305153 | −0.0779 | 3.3160 × 10−5 | 0.8126 | 0.7347 |
| Body | OpenSea |
| 3:65561644 | cg05244979 | −0.0510 | 3.4089 × 10−5 | 0.6869 | 0.6359 |
| Body | OpenSea |
| 4:113970506 | cg02815171 | 0.1165 | 4.5334 × 10−5 | 0.4218 | 0.5383 |
| TSS1500 | OpenSea |
| 7:156716133 | cg03184819 | −0.0907 | 4.9140 × 10−5 | 0.2529 | 0.1622 | IGR | OpenSea | |
| 9:4435234 | cg08538646 | −0.0717 | 4.2326 × 10−5 | 0.8585 | 0.7868 | IGR | OpenSea | |
| 9:117818174 | cg07712264 | −0.0555 | 4.0462 × 10−5 | 0.7059 | 0.6504 |
| Body | OpenSea |
| 10:25460855 | cg15018193 | −0.0439 | 1.1161 × 10−5 | 0.7583 | 0.7144 |
| Body | Self |
| 11:102124935 | cg06458665 | −0.0397 | 2.2954 × 10−5 | 0.8635 | 0.8237 | IGR | OpenSea | |
| 12:26451968 | cg13537590 | −0.0500 | 1.0817 × 10−5 | 0.7114 | 0.6614 | IGR | OpenSea | |
| 22:50710746 | cg22416596 | −0.0404 | 4.9783 × 10−5 | 0.6884 | 0.6481 | IGR | Shore |
Notes. 1 Human genome position of CpG site (GRCh37/hg19). 2 LogFC = logarithm of fold change. 3 Gene Loc = location of CpG site relative to coding gene. 4 CGI = CpG island. 5 IGR = Intergenic region.