Literature DB >> 34570697

A parameter-free statistical test for neuronal responsiveness.

Jorrit S Montijn1, Koen Seignette1, Marcus H Howlett1, J Leonie Cazemier1, Maarten Kamermans1, Christiaan N Levelt1, J Alexander Heimel1.   

Abstract

Neurophysiological studies depend on a reliable quantification of whether and when a neuron responds to stimulation. Simple methods to determine responsiveness require arbitrary parameter choices, such as binning size, while more advanced model-based methods require fitting and hyperparameter tuning. These parameter choices can change the results, which invites bad statistical practice and reduces the replicability. New recording techniques that yield increasingly large numbers of cells would benefit from a test for cell-inclusion that requires no manual curation. Here, we present the parameter-free ZETA-test, which outperforms t-tests, ANOVAs, and renewal-process-based methods by including more cells at a similar false-positive rate. We show that our procedure works across brain regions and recording techniques, including calcium imaging and Neuropixels data. Furthermore, in illustration of the method, we show in mouse visual cortex that (1) visuomotor-mismatch and spatial location are encoded by different neuronal subpopulations and (2) optogenetic stimulation of VIP cells leads to early inhibition and subsequent disinhibition.
© 2021, Montijn et al.

Entities:  

Keywords:  VIP disinhibition; mouse; neural data analysis; neuroscience; response latency; responsiveness; statistics; visual cortex; zebrafish

Mesh:

Year:  2021        PMID: 34570697      PMCID: PMC8626082          DOI: 10.7554/eLife.71969

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  45 in total

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Authors:  Jorrit S Montijn; Guido T Meijer; Carien S Lansink; Cyriel M A Pennartz
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5.  On the significance of correlations among neuronal spike trains.

Authors:  G Palm; A M Aertsen; G L Gerstein
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6.  Membrane properties of rat subicular neurons in vitro.

Authors:  D Mattia; G G Hwa; M Avoli
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7.  Selective Activation of the Deep Layers of the Human Primary Visual Cortex by Top-Down Feedback.

Authors:  Peter Kok; Lauren J Bains; Tim van Mourik; David G Norris; Floris P de Lange
Journal:  Curr Biol       Date:  2016-01-28       Impact factor: 10.834

8.  Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.

Authors:  Adam M Packer; Lloyd E Russell; Henry W P Dalgleish; Michael Häusser
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9.  Integration of visual motion and locomotion in mouse visual cortex.

Authors:  Aman B Saleem; Aslı Ayaz; Kathryn J Jeffery; Kenneth D Harris; Matteo Carandini
Journal:  Nat Neurosci       Date:  2013-11-03       Impact factor: 24.884

10.  Anatomy of hierarchy: feedforward and feedback pathways in macaque visual cortex.

Authors:  Nikola T Markov; Julien Vezoli; Pascal Chameau; Arnaud Falchier; René Quilodran; Cyril Huissoud; Camille Lamy; Pierre Misery; Pascale Giroud; Shimon Ullman; Pascal Barone; Colette Dehay; Kenneth Knoblauch; Henry Kennedy
Journal:  J Comp Neurol       Date:  2014-01-01       Impact factor: 3.215

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