Literature DB >> 34567579

Standardizing data reporting in the research community to enhance the utility of open data for SARS-CoV-2 wastewater surveillance.

Jill S McClary-Gutierrez1, Zachary T Aanderud2, Mitham Al-Faliti3, Claire Duvallet4, Raul Gonzalez5, Joe Guzman6, Rochelle H Holm7, Michael A Jahne8, Rose S Kantor9, Panagis Katsivelis10, Katrin Gaardbo Kuhn11, Laura M Langan12, Cresten Mansfeldt13, Sandra L McLellan14, Lorelay M Mendoza Grijalva15, Kevin S Murnane16,17,18, Colleen C Naughton19, Aaron I Packman20, Sotirios Paraskevopoulos21, Tyler S Radniecki22, Fernando A Roman19, Abhilasha Shrestha23, Lauren B Stadler24, Joshua A Steele25, Brian M Swalla26, Peter Vikesland27, Brian Wartell28, Carol J Wilusz29, Judith Chui Ching Wong30, Alexandria B Boehm15, Rolf U Halden31,32,33, Kyle Bibby1, Jeseth Delgado Vela3.   

Abstract

SARS-CoV-2 RNA detection in wastewater is being rapidly developed and adopted as a public health monitoring tool worldwide. With wastewater surveillance programs being implemented across many different scales and by many different stakeholders, it is critical that data collected and shared are accompanied by an appropriate minimal amount of metainformation to enable meaningful interpretation and use of this new information source and intercomparison across datasets. While some databases are being developed for specific surveillance programs locally, regionally, nationally, and internationally, common globally-adopted data standards have not yet been established within the research community. Establishing such standards will require national and international consensus on what metainformation should accompany SARS-CoV-2 wastewater measurements. To establish a recommendation on minimum information to accompany reporting of SARS-CoV-2 occurrence in wastewater for the research community, the United States National Science Foundation (NSF) Research Coordination Network on Wastewater Surveillance for SARS-CoV-2 hosted a workshop in February 2021 with participants from academia, government agencies, private companies, wastewater utilities, public health laboratories, and research institutes. This report presents the primary two outcomes of the workshop: (i) a recommendation on the set of minimum meta-information that is needed to confidently interpret wastewater SARS-CoV-2 data, and (ii) insights from workshop discussions on how to improve standardization of data reporting.

Entities:  

Year:  2021        PMID: 34567579      PMCID: PMC8459677          DOI: 10.1039/d1ew00235j

Source DB:  PubMed          Journal:  Environ Sci (Camb)        ISSN: 2053-1400            Impact factor:   4.251


  17 in total

Review 1.  Sampling for pharmaceuticals and personal care products (PPCPs) and illicit drugs in wastewater systems: are your conclusions valid? A critical review.

Authors:  Christoph Ort; Michael G Lawrence; Jörg Rieckermann; Adriano Joss
Journal:  Environ Sci Technol       Date:  2010-08-15       Impact factor: 9.028

2.  The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

Authors:  Stephen A Bustin; Vladimir Benes; Jeremy A Garson; Jan Hellemans; Jim Huggett; Mikael Kubista; Reinhold Mueller; Tania Nolan; Michael W Pfaffl; Gregory L Shipley; Jo Vandesompele; Carl T Wittwer
Journal:  Clin Chem       Date:  2009-02-26       Impact factor: 8.327

3.  SARS-CoV-2 RNA in wastewater anticipated COVID-19 occurrence in a low prevalence area.

Authors:  Walter Randazzo; Pilar Truchado; Enric Cuevas-Ferrando; Pedro Simón; Ana Allende; Gloria Sánchez
Journal:  Water Res       Date:  2020-05-16       Impact factor: 11.236

4.  Nextstrain: real-time tracking of pathogen evolution.

Authors:  James Hadfield; Colin Megill; Sidney M Bell; John Huddleston; Barney Potter; Charlton Callender; Pavel Sagulenko; Trevor Bedford; Richard A Neher
Journal:  Bioinformatics       Date:  2018-12-01       Impact factor: 6.931

5.  Detection of SARS-CoV-2 RNA in commercial passenger aircraft and cruise ship wastewater: a surveillance tool for assessing the presence of COVID-19 infected travellers.

Authors:  Warish Ahmed; Paul M Bertsch; Nicola Angel; Kyle Bibby; Aaron Bivins; Leanne Dierens; Janette Edson; John Ehret; Pradip Gyawali; Kerry A Hamilton; Ian Hosegood; Philip Hugenholtz; Guangming Jiang; Masaaki Kitajima; Homa T Sichani; Jiahua Shi; Katja M Shimko; Stuart L Simpson; Wendy J M Smith; Erin M Symonds; Kevin V Thomas; Rory Verhagen; Julian Zaugg; Jochen F Mueller
Journal:  J Travel Med       Date:  2020-08-20       Impact factor: 8.490

6.  SARS-CoV-2 RNA in Wastewater Settled Solids Is Associated with COVID-19 Cases in a Large Urban Sewershed.

Authors:  Katherine E Graham; Stephanie K Loeb; Marlene K Wolfe; David Catoe; Nasa Sinnott-Armstrong; Sooyeol Kim; Kevan M Yamahara; Lauren M Sassoubre; Lorelay M Mendoza Grijalva; Laura Roldan-Hernandez; Kathryn Langenfeld; Krista R Wigginton; Alexandria B Boehm
Journal:  Environ Sci Technol       Date:  2020-12-07       Impact factor: 9.028

7.  Early-pandemic wastewater surveillance of SARS-CoV-2 in Southern Nevada: Methodology, occurrence, and incidence/prevalence considerations.

Authors:  Daniel Gerrity; Katerina Papp; Mitchell Stoker; Alan Sims; Wilbur Frehner
Journal:  Water Res X       Date:  2020-12-31

8.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

Review 9.  SARS-CoV-2 in wastewater: State of the knowledge and research needs.

Authors:  Masaaki Kitajima; Warish Ahmed; Kyle Bibby; Annalaura Carducci; Charles P Gerba; Kerry A Hamilton; Eiji Haramoto; Joan B Rose
Journal:  Sci Total Environ       Date:  2020-04-30       Impact factor: 7.963

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  4 in total

1.  Regional Replacement of SARS-CoV-2 Variant Omicron BA.1 with BA.2 as Observed through Wastewater Surveillance.

Authors:  Alexandria B Boehm; Bridgette Hughes; Marlene K Wolfe; Bradley J White; Dorothea Duong; Vikram Chan-Herur
Journal:  Environ Sci Technol Lett       Date:  2022-05-26

2.  Evaluation of process limit of detection and quantification variation of SARS-CoV-2 RT-qPCR and RT-dPCR assays for wastewater surveillance.

Authors:  Warish Ahmed; Aaron Bivins; Suzanne Metcalfe; Wendy J M Smith; Matthew E Verbyla; Erin M Symonds; Stuart L Simpson
Journal:  Water Res       Date:  2022-02-03       Impact factor: 11.236

3.  Detection of SARS-CoV-2 Variants Mu, Beta, Gamma, Lambda, Delta, Alpha, and Omicron in Wastewater Settled Solids Using Mutation-Specific Assays Is Associated with Regional Detection of Variants in Clinical Samples.

Authors:  Marlene Wolfe; Bridgette Hughes; Dorothea Duong; Vikram Chan-Herur; Krista R Wigginton; Bradley J White; Alexandria B Boehm
Journal:  Appl Environ Microbiol       Date:  2022-04-05       Impact factor: 5.005

4.  Does normalization of SARS-CoV-2 concentrations by Pepper Mild Mottle Virus improve correlations and lead time between wastewater surveillance and clinical data in Alberta (Canada) comparing twelve SARS-CoV-2 normalization approaches.

Authors:  Rasha Maal-Bared; Yuanyuan Qiu; Qiaozhi Li; Tiejun Gao; Steve E Hrudey; Sudha Bhavanam; Norma J Ruecker; Erik Ellehoj; Bonita E Lee; Xiaoli Pang
Journal:  Sci Total Environ       Date:  2022-09-24       Impact factor: 10.753

  4 in total

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