| Literature DB >> 34562055 |
Tomas Roslin1,2, Panu Somervuo3, Mikko Pentinsaari4, Paul D N Hebert4, Jireh Agda4, Petri Ahlroth5, Perttu Anttonen6,7, Jouni Aspi8, Gergin Blagoev4, Santiago Blanco4, Dean Chan4, Tom Clayhills9, Jeremy deWaard4, Stephanie deWaard4, Tyler Elliot4, Riikka Elo10,11, Sami Haapala12, Eero Helve13, Jari Ilmonen14, Petri Hirvonen15, Chris Ho4, Juhani Itämies12, Vladislav Ivanov8, Jevgeni Jakovlev16, Aino Juslén17, Reijo Jussila18, Jere Kahanpää11, Lauri Kaila11, Ari Kakko12, Iiro Kakko19, Ali Karhu20, Sami Karjalainen21, Jostein Kjaerandsen22, Janne Koskinen2,23, Erkki M Laasonen24, Leena Laasonen24, Erkka Laine25, Petri Lampila24, Valerie Levesque-Beaudin4, Liuqiong Lu4, Meri Lähteenaro26,27, Pekka Majuri28, Sampsa Malmberg13, Ramya Manjunath4, Petri Martikainen29, Jaakko Mattila18, Jaclyn McKeown4, Petri Metsälä30, Margarita Miklasevskaja4, Meredith Miller4, Renee Miskie4, Arto Muinonen31, Suresh Naik4, Nadia Nikolova4, Kari Nupponen13, Otso Ovaskainen3,32,33, Ika Österblad34, Lauri Paasivirta35, Timo Pajunen17, Petri Parkko36, Juho Paukkunen11, Ritva Penttinen10,11, Kate Perez4, Jaakko Pohjoismäki23, Sean Prosser4, Martti Raekunnas37, Miduna Rahulan4, Meeri Rannisto17, Sujeevan Ratnasingham4, Pekka Raukko38, Aki Rinne24, Teemu Rintala39, Susana Miranda Romo4, Jukka Salmela40,41, Juha Salokannel42, Riitta Savolainen3, Leif Schulman5,17, Pasi Sihvonen17, Dina Soliman4, Jayme Sones4, Claudia Steinke4, Gunilla Ståhls17, Jukka Tabell43, Mikko Tiusanen2, Gergely Várkonyi44, Eero J Vesterinen1,45, Esko Viitanen13, Veli Vikberg46, Matti Viitasaari24, Jussi Vilen47, Connor Warne4, Catherine Wei4, Kaj Winqvist48, Evgeny Zakharov4, Marko Mutanen8.
Abstract
To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility (www.laji.fi) at https://laji.fi/en/theme/protax. Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.Entities:
Keywords: COI; DNA barcodes; PROTAX; probabilistic taxonomic assignment; reference library; species identification
Mesh:
Year: 2021 PMID: 34562055 DOI: 10.1111/1755-0998.13510
Source DB: PubMed Journal: Mol Ecol Resour ISSN: 1755-098X Impact factor: 7.090