Literature DB >> 34560090

Estimating cellular redundancy in networks of genetic expression.

Raffaella Mulas1, Michael J Casey2.   

Abstract

Networks of genetic expression can be modeled by hypergraphs with the additional structure that real coefficients are given to each vertex-edge incidence. The spectra, i.e. the multiset of the eigenvalues, of such hypergraphs, are known to encode structural information of the data. We show how these spectra can be used, in particular, in order to give an estimation of cellular redundancy, a novel measure of gene expression heterogeneity, of the network. We analyze some simulated and real data sets of gene expression for illustrating the new method proposed here.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cellular redundancy; Data analysis; Genetic expression; Hypergraphs; Spectral theory

Year:  2021        PMID: 34560090     DOI: 10.1016/j.mbs.2021.108713

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  1 in total

Review 1.  Allostery, and how to define and measure signal transduction.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Biophys Chem       Date:  2022-01-29       Impact factor: 2.352

  1 in total

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