Literature DB >> 34559646

A Nonparametric Approach for Estimating Three-Dimensional Fiber Orientation Distribution Functions (ODFs) in Fibrous Materials.

Adam Rauff, Lucas H Timmins, Ross T Whitaker, Jeffrey A Weiss.   

Abstract

Many biological tissues contain an underlying fibrous microstructure that is optimized to suit a physiological function. The fiber architecture dictates physical characteristics such as stiffness, diffusivity, and electrical conduction. Abnormal deviations of fiber architecture are often associated with disease. Thus, it is useful to characterize fiber network organization from image data in order to better understand pathological mechanisms. We devised a method to quantify distributions of fiber orientations based on the Fourier transform and the Qball algorithm from diffusion MRI. The Fourier transform was used to decompose images into directional components, while the Qball algorithm efficiently converted the directional data from the frequency domain to the orientation domain. The representation in the orientation domain does not require any particular functional representation, and thus the method is nonparametric. The algorithm was verified to demonstrate its reliability and used on datasets from microscopy to show its applicability. This method increases the ability to extract information of microstructural fiber organization from experimental data that will enhance our understanding of structure-function relationships and enable accurate representation of material anisotropy in biological tissues.

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Year:  2022        PMID: 34559646      PMCID: PMC9052546          DOI: 10.1109/TMI.2021.3115716

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   11.037


  48 in total

1.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

2.  Collagen fibril morphology and organization: implications for force transmission in ligament and tendon.

Authors:  Paolo P Provenzano; Ray Vanderby
Journal:  Matrix Biol       Date:  2005-11-03       Impact factor: 11.583

3.  Using transmission electron microscopy and 3View to determine collagen fibril size and three-dimensional organization.

Authors:  Tobias Starborg; Nicholas S Kalson; Yinhui Lu; Aleksandr Mironov; Timothy F Cootes; David F Holmes; Karl E Kadler
Journal:  Nat Protoc       Date:  2013-06-27       Impact factor: 13.491

4.  Three-dimensional computation of fibre orientation, diameter and branching in segmented image stacks of fibrous networks.

Authors:  Jeremy D Eekhoff; Spencer P Lake
Journal:  J R Soc Interface       Date:  2020-08-05       Impact factor: 4.118

5.  Diffusion anisotropy in collagen gels and tumors: the effect of fiber network orientation.

Authors:  Triantafyllos Stylianopoulos; Benjamin Diop-Frimpong; Lance L Munn; Rakesh K Jain
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  Structural analysis of articular cartilage using multiphoton microscopy: input for biomechanical modeling.

Authors:  Magnus B Lilledahl; David M Pierce; Tim Ricken; Gerhard A Holzapfel; Catharina de Lange Davies
Journal:  IEEE Trans Med Imaging       Date:  2011-04-07       Impact factor: 10.048

Review 7.  Hyperelastic modelling of arterial layers with distributed collagen fibre orientations.

Authors:  T Christian Gasser; Ray W Ogden; Gerhard A Holzapfel
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

Review 8.  Random versus directionally persistent cell migration.

Authors:  Ryan J Petrie; Andrew D Doyle; Kenneth M Yamada
Journal:  Nat Rev Mol Cell Biol       Date:  2009-07-15       Impact factor: 94.444

9.  Biomechanics of articular cartilage and determination of material properties.

Authors:  Xin L Lu; Van C Mow
Journal:  Med Sci Sports Exerc       Date:  2008-02       Impact factor: 5.411

10.  Patterned collagen fibers orient branching mammary epithelium through distinct signaling modules.

Authors:  Douglas G Brownfield; Gautham Venugopalan; Alvin Lo; Hidetoshi Mori; Kandice Tanner; Daniel A Fletcher; Mina J Bissell
Journal:  Curr Biol       Date:  2013-04-04       Impact factor: 10.834

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  1 in total

1.  Matrix anisotropy promotes angiogenesis in a density-dependent manner.

Authors:  Steven A LaBelle; Shad S Dinkins; James B Hoying; Elena V Budko; Adam Rauff; Hannah A Strobel; Allen H Lin; Jeffrey A Weiss
Journal:  Am J Physiol Heart Circ Physiol       Date:  2022-03-25       Impact factor: 4.733

  1 in total

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