| Literature DB >> 34555158 |
Donia Bouzid1,2, Enrique Casalino1,2, Jimmy Mullaert1,3, Odile Laurent2, Xavier Duval1,3, François Xavier Lescure1,4, Nathan Peiffer Smadja1,4, Sarah Tubiana1,3, Laurence Armand Lefèvre1,5, Diane Descamps1,6, Nadhira Fidouh1,6, Christophe Choquet2, Jean-Christophe Lucet1,7, Benoit Visseaux1,6.
Abstract
BACKGROUND: Virus-associated respiratory infections are in the spotlight with the emergence of SARS-CoV-2 and the expanding use of multiplex PCR (mPCR). The impact of molecular testing as a point-of-care test (POCT) in the emergency department (ED) is still unclear.Entities:
Mesh:
Year: 2021 PMID: 34555158 PMCID: PMC8460108 DOI: 10.1093/jac/dkab241
Source DB: PubMed Journal: J Antimicrob Chemother ISSN: 0305-7453 Impact factor: 5.790
Figure 1.Study flow chart. ED, emergency department; ILI, influenza-like illness.
Comparison of patients’ baseline characteristics and prognosis
| Variables | All | Point-of-care testing | Central testing |
|
|---|---|---|---|---|
| ( | ( | ( | ||
| Patient characteristics | ||||
| Male, | 266 (56) | 154 (56) | 112 (56) | 1 |
| Age (years), median (IQR) | 73 (62–85) | 73 (62–84) | 72 (60–85) | 0.41 |
| Temperature (°C), median (IQR) | 37 (37–38) | 37 (37–38) | 37 (36–38) | 0.48 |
| Systolic blood pressure (mmHg), median (IQR) | 131 (113–149) | 131 (114–151) | 129 (112–145) | 0.11 |
| SpO2 (%), median (IQR) | 95 (92–97) | 95 (91–97) | 95 (93–98) | 0.51 |
| Heart rate (bpm), median (IQR) | 94 (81–110) | 95 (81–110) | 92 (82–107) | 0.18 |
| Respiratory rate (min), median (IQR) | 19 (16–24) | 20 (17–25) | 18 (16–22) | 0.09 |
| Duration of symptoms before ED visit (days), median (IQR) | 2 (1–4) | 2 (1–4) | 2 (1–4) | 0.65 |
| CRB-65 score, median (IQR) | 1 (1–1) | 1 (1–2) | 1 (1–1) | 0.14 |
| Charlson Score, median (IQR) | 4 (3–6) | 5 (3–6) | 4 (3–6) | 0.12 |
| PCR turnaround times (h), median (IQR) | 1.1 (1.1–1.1) | 19.6 (12.7–39.2) | ||
| Virological results | ||||
| Negative PCR, | 288 (61) | 155 (56) | 133 (67) | 0.02 |
| Positive PCR, | 186 (39) | 120 (44) | 66 (33) | 0.02 |
| Coinfections, | 13 (3) | 7 (3) | 6 (3) | 0.78 |
| Identified pathogens | 0.25 | |||
| Influenza A | 49 (25) | 35 (28) | 14 (20) | |
| Influenza B | 6 (3) | 4 (3) | 2 (3) | |
| Entero/rhinovirus | 54 (27) | 32 (25) | 22 (31) | |
| Metapneumovirus | 23 (12) | 16 (13) | 7 (10) | |
| RSV | 30 (15) | 15 (12) | 15 (21) | |
| Parainfluenza | 11 (6) | 8 (6) | 3 (4) | |
| Coronavirus | 19 (10) | 15 (12) | 4 (6) | |
| | 3 (2) | 1 (1) | 2 (3) | |
| | 1 (1) | 0 (0) | 1 (1) | |
| Bocavirus | 1 (1) | 1 (1) | 0 (0) | |
| Patient management | ||||
| Isolation | ||||
| Single room or double room with blocked bed, | 207 (44) | 122(44) | 85 (43) | 0.61 |
| Double room, | 267 (56) | 153 (56) | 114 (57) | |
| Orientation | ||||
| Medical ward | 206 (43) | 117 (43) | 89 (45) | 0.39 |
| ICU | 29 (6) | 18 (7) | 11 (6) | |
| Transfer to another hospital | 171 (36) | 103 (38) | 68 (35) | |
| ED ward | 118 (25) | 63 (23) | 55 (28) | |
| Antibiotics before ED visit | 62 (13) | 38 (14) | 24 (12) | 0.81 |
| Antibiotics at the ED ( | 275 (58) | 160 (59) | 115 (58) | 0.92 |
| Oseltamivir | 44 (9) | 30 (11) | 14 (7) | 0.15 |
| Patient outcomes | ||||
| LOS | 7 (3–14) | 7 (3–14) | 7 (2–13) | 0.29 |
| ED-LOS <1 day | 291 (61) | 172 (63) | 119 (60) | 0.57 |
| Patients still hospitalized at day 30 | 41 (9) | 26 (9) | 15 (8) | 0.51 |
| Patient death during hospitalization | 37 (8) | 25 (9) | 12 (6) | 0.3 |
Values shown are n (%) or median (IQR). ED, emergency department; LOS, length of stay; RSV, respiratory syncytial virus.
P value of the Fisher test for categorical variables, or Wilcoxon test for quantitative variables.
Nineteen patients are missing due to an unknown length of stay; the length of stay for patients still hospitalized on D30 was set at 30 days.
Factors associated with length of stay (univariable and multivariable linear regression)
| Univariable analysis ( | Multivariable analysis ( | ||||
|---|---|---|---|---|---|
| Variables | Median (IQR) | Estimation (95% CI) |
| Estimation (95% CI) |
|
| Study arm | |||||
| Central testing | 7 (2–13) | 0 (ref) | 0.34 | 0 (ref) | |
| POCT | 7 (3–14) | 0.8 (−0.9 to 2.6) | 0.3 (−1.2 to 1.8) | 0.66 | |
| Sex | |||||
| M | 7 (2–13) | 0 (ref) | 0.59 | 0 (ref) | |
| F | 8 (3–15) | 0.5 (−1.2 to 2.2) | 0.9 (−0.6 to 2.4) | 0.24 | |
| Age (/10 years) | 0.7 (0.2 to 1.2) | 0.003 | 0.3 (−0.2 to 0.9) | 0.23 | |
| Symptom duration before ED visit (days) | 0.1 (−0.1 to 0.3) | 0.22 | |||
| CRB65 score | 2.6 (1.5 to 3.7) | <0.001 | 1.2 (0.1 to 2.4) | 0.041 | |
| Charlson’s score | 0.5 (0.2 to 0.9) | 0.005 | |||
| Antibiotics before ED | 8 (2–18) | 1.6 (−0.9 to 4.1) | 0.21 | ||
| Administered antibiotics in ED | 7 (3–14) | 0.9 (−0.8 to 2.6) | 0.31 | ||
| Oseltamivir | 6 (1–13) | −0.2 (−3.1 to 2.7) | 0.88 | ||
| Medical ward | 9 (5–15) | 0 (ref) | <0.001 | 0 (ref) | |
| ICU | 25 (11–30) | 9 (6 to 12.1) | 8.9 (5.8 to −12.1) | <0.001 | |
| Transfer | 9 (6–15) | 0.9 (−1.0 to 2.8) | 0.4 (−1.6 to 2.3) | 0.72 | |
| ED ward | 1 (1–2) | −8.3 (−10.1 to −6.5) | −8 (−9.8 to −6.1) | <0.001 | |
| Isolation | |||||
| Single room | 8 (4–15) | 0 (ref) | 0.39 | ||
| Double room with blocked bed | 6 (2–13) | −1.2 (−2.9 to 0.5) | |||
| Double room | 10 (8–10) | 0.3 (−7.2 to 7.7) | |||
ED, emergency department; POCT, point-of-care testing.
P value of the Likelihood Ratio Test.
P value of the Wald test.
Factors associated with ED-LOS <1 day (univariable logistic regression)
| Univariable analysis | ||
|---|---|---|
| Variables | OR (95% CI) |
|
| Study arm | ||
| Central testing | 1 (ref) | 0.54 |
| POCT | 1.1 (0.8–1.6) | |
| Sex | ||
| M | 1 (ref) | 0.89 |
| F | 1.0 (0.7–1.4) | |
| Age (years) | 1.0 (1.0–1.0) | 0.92 |
| Symptom duration before ED visit (days) | 1.1 (0.9–1.4) | 0.44 |
| CRB65 score | 1.0 (0.9–1.1) | 0.76 |
| Charlson’s score | 1.3 (0.7–2.3) | 0.4 |
| Antibiotics before ED | 1.0 (0.7–1.4) | 0.92 |
| Oseltamivir | 1.4 (0.7–2.8) | 0.3 |
| Isolation | ||
| Single room | 1 (ref) | 0.3 |
| Double room with a blocked bed | 0.8 (0.5–1.1) | |
| Double room | 1.3 (0.3–9.6) | |
ED, emergency department; POCT, point-of-care testing.
P value of the Wald test.
Factors associated with the prescription of suitable single-room assignment in patients with a recommendation for single-room assignment (univariable and multivariable logistic regression)
| Univariable analysis ( | Multivariable analysis | |||
|---|---|---|---|---|
| Variables | OR (95% CI) |
| OR (95% CI) |
|
| Study arm | ||||
| Central testing | 1 (ref) | 0.012 | 1 (ref) | |
| POCT | 2.9 (1.3–6.7) | 2.9 (1.3–6.8) | 0.014 | |
| Sex | ||||
| M | 1 (ref) | 0.62 | 1 (ref) | |
| F | 0.8 (0.4–1.8) | 0.9 (0.4–2.2) | 0.86 | |
| Age (years) | 1.0 (1.0–1.0) | 0.95 | 1.0 (1.0–1.0) | 0.79 |
| Symptoms duration before ED visit (days) | 1.0 (0.9–1.2) | 0.89 | ||
| CRB65 score | 1.0 (0.6–1.8) | 1 | ||
| Charlson’s score | 1.0 (0.8–1.2) | 0.89 | ||
| Antibiotics before ED | 0.9 (0.3–2.5) | 0.84 | ||
| ED antibiotics administration | 0.6 (0.2–1.3) | 0.18 | ||
| Oseltamivir | 1.0 (0.4–2.3) | 0.93 | ||
ED, emergency department; POCT, point-of-care-testing.
P value of the Likelihood Ratio Test.
P value of the Wald test.
Multiplex PCR result and single room assignment of patients isolated by pathogen
| Characteristic | Single room assignment, POCT period, | Single room assignment, central testing period, |
|
|---|---|---|---|
| Overall single room assignment | 122/275 (44) | 85/199 (43) | 0.72 |
| Pathogen with local recommendation for single room assignment | 52/70 (74) | 19/38 (50) | 0.019 |
| Influenza A | 27/35 (77) | 8/14 (57) | 0.18 |
| Influenza B | 4/4 (100) | 1/2 (50) | 0.33 |
| Metapneumovirus | 11/16 (69) | 1/7 (14) | 0.027 |
| RSV | 10/15 (67) | 9/15 (60) | 1 |
| Unrequired single room assignment | 70/205 (34) | 66/161 (40) | 0.36 |
| Rhinovirus | 7/28 (25) | 8/19 (42) | 0.34 |
| Parainfluenza | 2/8 (25) | 2/3 (67) | 0.49 |
| Coronavirus | 8/13 (62) | 2/3 (67) | 1 |
| Negative PCR | 53/155 (34) | 53/133 (40) | 0.33 |
POCT, point-of-care testing; RSV, respiratory syncytial virus.
P value of the Fisher test.
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