Literature DB >> 34554826

Defining variant-resistant epitopes targeted by SARS-CoV-2 antibodies: A global consortium study.

Kathryn M Hastie1, Haoyang Li1, Daniel Bedinger2, Sharon L Schendel1, S Moses Dennison3, Kan Li3, Vamseedhar Rayaprolu1, Xiaoying Yu1, Colin Mann1, Michelle Zandonatti1, Ruben Diaz Avalos1, Dawid Zyla1, Tierra Buck1, Sean Hui1, Kelly Shaffer1, Chitra Hariharan1, Jieyun Yin1, Eduardo Olmedillas1, Adrian Enriquez1, Diptiben Parekh1, Milite Abraha3, Elizabeth Feeney3, Gillian Q Horn3, Yoann Aldon4, Hanif Ali5, Sanja Aracic6, Ronald R Cobb7, Ross S Federman8, Joseph M Fernandez9, Jacob Glanville10, Robin Green8, Gevorg Grigoryan8, Ana G Lujan Hernandez11, David D Ho12, Kuan-Ying A Huang13, John Ingraham8, Weidong Jiang14, Paul Kellam15,16, Cheolmin Kim17, Minsoo Kim17, Hyeong Mi Kim17, Chao Kong18, Shelly J Krebs19, Fei Lan9,20, Guojun Lang18, Sooyoung Lee17, Cheuk Lun Leung8, Junli Liu14, Yanan Lu9,21, Anna MacCamy22, Andrew T McGuire22, Anne L Palser15, Terence H Rabbitts5,23, Zahra Rikhtegaran Tehrani24, Mohammad M Sajadi24, Rogier W Sanders4, Aaron K Sato11, Liang Schweizer25, Jimin Seo17, Bingqing Shen25, Jonne L Snitselaar4, Leonidas Stamatatos22, Yongcong Tan18, Milan T Tomic26, Marit J van Gils4, Sawsan Youssef10, Jian Yu12, Tom Z Yuan11, Qian Zhang25, Bjoern Peters1,27, Georgia D Tomaras3, Timothy Germann2, Erica Ollmann Saphire1,27.   

Abstract

Antibody-based therapeutics and vaccines are essential to combat COVID-19 morbidity and mortality after severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Multiple mutations in SARS-CoV-2 that could impair antibody defenses propagated in human-to-human transmission and spillover or spillback events between humans and animals. To develop prevention and therapeutic strategies, we formed an international consortium to map the epitope landscape on the SARS-CoV-2 spike protein, defining and structurally illustrating seven receptor binding domain (RBD)–directed antibody communities with distinct footprints and competition profiles. Pseudovirion-based neutralization assays reveal spike mutations, individually and clustered together in variants, that affect antibody function among the communities. Key classes of RBD-targeted antibodies maintain neutralization activity against these emerging SARS-CoV-2 variants. These results provide a framework for selecting antibody treatment cocktails and understanding how viral variants might affect antibody therapeutic efficacy.

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Year:  2021        PMID: 34554826      PMCID: PMC9302186          DOI: 10.1126/science.abh2315

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  47 in total

1.  Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike.

Authors:  Lihong Liu; Pengfei Wang; Manoj S Nair; Jian Yu; Micah Rapp; Qian Wang; Yang Luo; Jasper F-W Chan; Vincent Sahi; Amir Figueroa; Xinzheng V Guo; Gabriele Cerutti; Jude Bimela; Jason Gorman; Tongqing Zhou; Zhiwei Chen; Kwok-Yung Yuen; Peter D Kwong; Joseph G Sodroski; Michael T Yin; Zizhang Sheng; Yaoxing Huang; Lawrence Shapiro; David D Ho
Journal:  Nature       Date:  2020-07-22       Impact factor: 49.962

2.  Landscape analysis of escape variants identifies SARS-CoV-2 spike mutations that attenuate monoclonal and serum antibody neutralization.

Authors:  Zhuoming Liu; Laura A VanBlargan; Louis-Marie Bloyet; Paul W Rothlauf; Rita E Chen; Spencer Stumpf; Haiyan Zhao; John M Errico; Elitza S Theel; Mariel J Liebeskind; Brynn Alford; William J Buchser; Ali H Ellebedy; Daved H Fremont; Michael S Diamond; Sean P J Whelan
Journal:  bioRxiv       Date:  2021-01-11

3.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

4.  mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants.

Authors:  Zijun Wang; Fabian Schmidt; Yiska Weisblum; Frauke Muecksch; Christopher O Barnes; Shlomo Finkin; Dennis Schaefer-Babajew; Melissa Cipolla; Christian Gaebler; Jenna A Lieberman; Thiago Y Oliveira; Zhi Yang; Morgan E Abernathy; Kathryn E Huey-Tubman; Arlene Hurley; Martina Turroja; Kamille A West; Kristie Gordon; Katrina G Millard; Victor Ramos; Justin Da Silva; Jianliang Xu; Robert A Colbert; Roshni Patel; Juan Dizon; Cecille Unson-O'Brien; Irina Shimeliovich; Anna Gazumyan; Marina Caskey; Pamela J Bjorkman; Rafael Casellas; Theodora Hatziioannou; Paul D Bieniasz; Michel C Nussenzweig
Journal:  Nature       Date:  2021-02-10       Impact factor: 69.504

5.  A neutralizing human antibody binds to the N-terminal domain of the Spike protein of SARS-CoV-2.

Authors:  Xiangyang Chi; Renhong Yan; Jun Zhang; Guanying Zhang; Yuanyuan Zhang; Meng Hao; Zhe Zhang; Pengfei Fan; Yunzhu Dong; Yilong Yang; Zhengshan Chen; Yingying Guo; Jinlong Zhang; Yaning Li; Xiaohong Song; Yi Chen; Lu Xia; Ling Fu; Lihua Hou; Junjie Xu; Changming Yu; Jianmin Li; Qiang Zhou; Wei Chen
Journal:  Science       Date:  2020-06-22       Impact factor: 47.728

6.  Multimeric antibodies with increased valency surpassing functional affinity and potency thresholds using novel formats.

Authors:  Ami Miller; Stephen Carr; Terry Rabbitts; Hanif Ali
Journal:  MAbs       Date:  2020 Jan-Dec       Impact factor: 5.857

7.  An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain.

Authors:  Nicholas C Wu; Meng Yuan; Hejun Liu; Chang-Chun D Lee; Xueyong Zhu; Sandhya Bangaru; Jonathan L Torres; Tom G Caniels; Philip J M Brouwer; Marit J van Gils; Rogier W Sanders; Andrew B Ward; Ian A Wilson
Journal:  Cell Rep       Date:  2020-09-29       Impact factor: 9.423

8.  Rapid isolation and profiling of a diverse panel of human monoclonal antibodies targeting the SARS-CoV-2 spike protein.

Authors:  Seth J Zost; Pavlo Gilchuk; Rita E Chen; James Brett Case; Joseph X Reidy; Andrew Trivette; Rachel S Nargi; Rachel E Sutton; Naveenchandra Suryadevara; Elaine C Chen; Elad Binshtein; Swathi Shrihari; Mario Ostrowski; Helen Y Chu; Jonathan E Didier; Keith W MacRenaris; Taylor Jones; Samuel Day; Luke Myers; F Eun-Hyung Lee; Doan C Nguyen; Ignacio Sanz; David R Martinez; Paul W Rothlauf; Louis-Marie Bloyet; Sean P J Whelan; Ralph S Baric; Larissa B Thackray; Michael S Diamond; Robert H Carnahan; James E Crowe
Journal:  Nat Med       Date:  2020-07-10       Impact factor: 87.241

9.  Broad neutralization of SARS-related viruses by human monoclonal antibodies.

Authors:  Anna Z Wec; Daniel Wrapp; Andrew S Herbert; Daniel P Maurer; Denise Haslwanter; Mrunal Sakharkar; Rohit K Jangra; M Eugenia Dieterle; Asparouh Lilov; Deli Huang; Longping V Tse; Nicole V Johnson; Ching-Lin Hsieh; Nianshuang Wang; Juergen H Nett; Elizabeth Champney; Irina Burnina; Michael Brown; Shu Lin; Melanie Sinclair; Carl Johnson; Sarat Pudi; Robert Bortz; Ariel S Wirchnianski; Ethan Laudermilch; Catalina Florez; J Maximilian Fels; Cecilia M O'Brien; Barney S Graham; David Nemazee; Dennis R Burton; Ralph S Baric; James E Voss; Kartik Chandran; John M Dye; Jason S McLellan; Laura M Walker
Journal:  Science       Date:  2020-06-15       Impact factor: 47.728

10.  Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.

Authors:  Bette Korber; Will M Fischer; Sandrasegaram Gnanakaran; Hyejin Yoon; James Theiler; Werner Abfalterer; Nick Hengartner; Elena E Giorgi; Tanmoy Bhattacharya; Brian Foley; Kathryn M Hastie; Matthew D Parker; David G Partridge; Cariad M Evans; Timothy M Freeman; Thushan I de Silva; Charlene McDanal; Lautaro G Perez; Haili Tang; Alex Moon-Walker; Sean P Whelan; Celia C LaBranche; Erica O Saphire; David C Montefiori
Journal:  Cell       Date:  2020-07-03       Impact factor: 66.850

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  85 in total

Review 1.  The humoral response and antibodies against SARS-CoV-2 infection.

Authors:  Hai Qi; Linqi Zhang; Bo Liu; Xinquan Wang
Journal:  Nat Immunol       Date:  2022-06-27       Impact factor: 31.250

2.  COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.

Authors:  Anthony Huffman; Edison Ong; Junguk Hur; Adonis D'Mello; Hervé Tettelin; Yongqun He
Journal:  Brief Bioinform       Date:  2022-07-18       Impact factor: 13.994

3.  Structural basis of a two-antibody cocktail exhibiting highly potent and broadly neutralizing activities against SARS-CoV-2 variants including diverse Omicron sublineages.

Authors:  Xiaoman Li; Yongbing Pan; Qiangling Yin; Zejun Wang; Sisi Shan; Laixing Zhang; Jinfang Yu; Yuanyuan Qu; Lina Sun; Fang Gui; Jia Lu; Zhaofei Jing; Wei Wu; Tao Huang; Xuanling Shi; Jiandong Li; Xinguo Li; Dexin Li; Shiwen Wang; Maojun Yang; Linqi Zhang; Kai Duan; Mifang Liang; Xiaoming Yang; Xinquan Wang
Journal:  Cell Discov       Date:  2022-09-08       Impact factor: 38.079

4.  Healthy humans can be a source of antibodies countering COVID-19.

Authors:  Nileena Velappan; Hau B Nguyen; Sofiya Micheva-Viteva; Daniel Bedinger; Chunyan Ye; Betty Mangadu; Austin J Watts; Robert Meagher; Steven Bradfute; Bin Hu; Geoffrey S Waldo; Antonietta M Lillo
Journal:  Bioengineered       Date:  2022-05       Impact factor: 6.832

Review 5.  Current Effective Therapeutics in Management of COVID-19.

Authors:  Kavya Atluri; Iris Aimlin; Shitij Arora
Journal:  J Clin Med       Date:  2022-07-01       Impact factor: 4.964

6.  Anatomy of Omicron BA.1 and BA.2 neutralizing antibodies in COVID-19 mRNA vaccinees.

Authors:  Emanuele Andreano; Ida Paciello; Silvia Marchese; Lorena Donnici; Giulio Pierleoni; Giulia Piccini; Noemi Manganaro; Elisa Pantano; Valentina Abbiento; Piero Pileri; Linda Benincasa; Ginevra Giglioli; Margherita Leonardi; Piet Maes; Concetta De Santi; Claudia Sala; Emanuele Montomoli; Raffaele De Francesco; Rino Rappuoli
Journal:  Nat Commun       Date:  2022-06-13       Impact factor: 17.694

Review 7.  Antibody-mediated neutralization of SARS-CoV-2.

Authors:  Henning Gruell; Kanika Vanshylla; Timm Weber; Christopher O Barnes; Christoph Kreer; Florian Klein
Journal:  Immunity       Date:  2022-05-13       Impact factor: 43.474

Review 8.  Molecular characteristics, immune evasion, and impact of SARS-CoV-2 variants.

Authors:  Cong Sun; Chu Xie; Guo-Long Bu; Lan-Yi Zhong; Mu-Sheng Zeng
Journal:  Signal Transduct Target Ther       Date:  2022-06-28

9.  Broadly Neutralizing Antibodies to SARS-CoV-2 Provide Novel Insights Into the Neutralization of Variants and Other Human Coronaviruses.

Authors:  Prashant Bajpai; Vanshika Singh; Anmol Chandele; Sanjeev Kumar
Journal:  Front Cell Infect Microbiol       Date:  2022-06-16       Impact factor: 6.073

10.  A broadly cross-reactive antibody neutralizes and protects against sarbecovirus challenge in mice.

Authors:  David R Martinez; Alexandra Schäfer; Sophie Gobeil; Dapeng Li; Gabriela De la Cruz; Robert Parks; Xiaozhi Lu; Maggie Barr; Victoria Stalls; Katarzyna Janowska; Esther Beaudoin; Kartik Manne; Katayoun Mansouri; Robert J Edwards; Kenneth Cronin; Boyd Yount; Kara Anasti; Stephanie A Montgomery; Juanjie Tang; Hana Golding; Shaunna Shen; Tongqing Zhou; Peter D Kwong; Barney S Graham; John R Mascola; David C Montefiori; S Munir Alam; Gregory Sempowski; Gregory D Sempowski; Surender Khurana; Kevin Wiehe; Kevin O Saunders; Priyamvada Acharya; Barton F Haynes; Ralph S Baric
Journal:  Sci Transl Med       Date:  2022-01-26       Impact factor: 17.956

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