Literature DB >> 34553327

Characterization and Phylogenetic Analysis of the Complete Mitochondrial Genome of Saturnia japonica.

Jiang Liu1, Junjun Dai2, Jinjin Jia1, Yemei Zong1, Yahao Sun1, Ying Peng1, Lei Wang1, Cen Qian1, Baojian Zhu1, Guoqing Wei3.   

Abstract

The complete mitochondrial genome (mitogenome) of Saturnia japonica (Lepidoptera: Saturniidae) was sequenced and annotated. It is a circular molecule of 15, 376 bp, composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNA), and an adenine (A) + thymine (T)-rich region. All protein-coding genes (PCGs) are initiated by the ATN codon except for cytochrome c oxidase subunit 1 (cox1) gene that is seemingly initiated by the CGA codon. Except for cox2 and nad4, which were terminated by incomplete stop codon T or TA, the rest were terminated by canonical stop codon TAA. The A + T-rich region is high conservative, including 'ATAGA' motif followed by a 19 bp poly-T stretch, a microsatellite-like element (AT)9 and also a poly-A element, with a total length of 332 bp. The Asn codon was the most frequently used codon, followed by Ile, Leu2, Lys, Met, Phe, and Tyr, while Cys was the least frequently used codon. Phylogenetic relationships analysis based on the 13 PCGs by using maximum likelihood (ML) and neighbor Joining (NJ) revealed that S. japonica belongs to the Saturniidae family. In this study, the annotation and characteristics of the mitogenome of S. japonica were resolved for the first time, which laid a foundation for species classification and the molecular evolution of Lepidoptera: Saturniidae.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Genome organization; Mitochondrial genome; Phylogeny; Saturnia japonica

Mesh:

Substances:

Year:  2021        PMID: 34553327     DOI: 10.1007/s10528-021-10129-9

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   1.890


  30 in total

1.  Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences.

Authors:  M Miya; A Kawaguchi; M Nishida
Journal:  Mol Biol Evol       Date:  2001-11       Impact factor: 16.240

Review 2.  Animal mitochondrial genomes.

Authors:  J L Boore
Journal:  Nucleic Acids Res       Date:  1999-04-15       Impact factor: 16.971

3.  Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution.

Authors:  Alexandre Hassanin
Journal:  Mol Phylogenet Evol       Date:  2005-11-14       Impact factor: 4.286

Review 4.  Insect mitochondrial genomics: implications for evolution and phylogeny.

Authors:  Stephen L Cameron
Journal:  Annu Rev Entomol       Date:  2013-10-16       Impact factor: 19.686

5.  Babesia gibsoni endemic to Wuhan, China: mitochondrial genome sequencing, annotation, and comparison with apicomplexan parasites.

Authors:  Jiaying Guo; Xiaoyan Miao; Pei He; Muxiao Li; Sen Wang; Jie Cui; Cuiqin Huang; Lan He; Junlong Zhao
Journal:  Parasitol Res       Date:  2018-11-24       Impact factor: 2.289

6.  The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths.

Authors:  Stephen L Cameron; Michael F Whiting
Journal:  Gene       Date:  2007-12-11       Impact factor: 3.688

7.  The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae).

Authors:  Ana Carolina M Junqueira; Ana Cláudia Lessinger; Tatiana Teixeira Torres; Felipe Rodrigues da Silva; André Luiz Vettore; Paulo Arruda; Ana Maria L Azeredo Espin
Journal:  Gene       Date:  2004-09-15       Impact factor: 3.688

8.  The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera.

Authors:  Yong-Qiang Cao; Chuan Ma; Ji-Yue Chen; Da-Rong Yang
Journal:  BMC Genomics       Date:  2012-06-22       Impact factor: 3.969

9.  Characterization of the complete mitochondrial genomes of Cnaphalocrocis medinalis and Chilo suppressalis (Lepidoptera: Pyralidae).

Authors:  Huan-Na Chai; Yu-Zhou Du; Bao-Ping Zhai
Journal:  Int J Biol Sci       Date:  2012-04-17       Impact factor: 6.580

10.  Characterization of the complete mitochondrial genome of the giant silkworm moth, Eriogyna pyretorum (Lepidoptera: Saturniidae).

Authors:  Shao-Tong Jiang; Gui-Yun Hong; Miao Yu; Na Li; Ying Yang; Yan-Qun Liu; Zhao-Jun Wei
Journal:  Int J Biol Sci       Date:  2009-05-22       Impact factor: 6.580

View more
  2 in total

1.  Mitogenomics and phylogenetics of twelve species of African Saturniidae (Lepidoptera).

Authors:  Zwannda Nethavhani; Rieze Straeuli; Kayleigh Hiscock; Ruan Veldtman; Andrew Morton; Rolf G Oberprieler; Barbara van Asch
Journal:  PeerJ       Date:  2022-04-18       Impact factor: 3.061

2.  Unfolding the mitochondrial genome structure of green semilooper (Chrysodeixis acuta Walker): An emerging pest of onion (Allium cepa L.).

Authors:  Soumia P S; Dhananjay V Shirsat; Ram Krishna; Guru Pirasanna Pandi G; Jaipal S Choudhary; Naiyar Naaz; Karuppaiah V; Pranjali A Gedam; Anandhan S; Major Singh
Journal:  PLoS One       Date:  2022-08-30       Impact factor: 3.752

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.