Literature DB >> 34553287

Bacterial communities associated with Zeldia punctata, a bacterivorous soil-borne nematode.

Ebrahim Shokoohi1, Phatu William Mashela2, Ricardo A R Machado3.   

Abstract

Soil inhabiting organisms are important determinants of agroecosystem productivity. Understanding the composition, the abundance, and the type of interactions established by soil microorganisms is therefore crucial to design strategies to improve agricultural practices and agroecosystem management. In this study, we collected Zeldia punctata nematodes in maize fields in South Africa and profiled their associated bacterial communities using next-generation sequencing. We observed that Z. punctata nematodes establish associations with ecologically diverse bacterial species. The most abundant species observed are Pseudomonas syringae, a phytopathogenic bacterial complex; Lactobacillus paraplantarum, a broadly distributed bacterial species that is present in soils, water bodies, and animal intestinal tracts and has certain probiotic and antimicrobial properties; and Melissococcus plutonius, a serious pathogenic bacterial species that causes brood disease in honeybees. Our study contributes to a better understanding of the soil bacterial communities associated with nematodes in maize agricultural soils in South Africa and unravels the presence of diverse detrimental and beneficial nematode-associated bacteria.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Free-living nematode; Metagenomics; Microbiome; Next-generation sequencing; Symbiotic bacteria

Mesh:

Substances:

Year:  2021        PMID: 34553287     DOI: 10.1007/s10123-021-00207-8

Source DB:  PubMed          Journal:  Int Microbiol        ISSN: 1139-6709            Impact factor:   2.479


  20 in total

1.  Nematode Root Herbivory in Tomato Increases Leaf Defenses and Reduces Leaf Miner Oviposition and Performance.

Authors:  Carla C M Arce; Ricardo A R Machado; Natália S Ribas; Paulo F Cristaldo; Lívia M S Ataíde; Ângelo Pallini; Flávia M Carmo; Leandro G Freitas; Eraldo Lima
Journal:  J Chem Ecol       Date:  2017-01-13       Impact factor: 2.626

2.  The use of anthropometry to assess nutritional status.

Authors:  J Gorstein; J Akré
Journal:  World Health Stat Q       Date:  1988

3.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Authors:  Evan Bolyen; Jai Ram Rideout; Matthew R Dillon; Nicholas A Bokulich; Christian C Abnet; Gabriel A Al-Ghalith; Harriet Alexander; Eric J Alm; Manimozhiyan Arumugam; Francesco Asnicar; Yang Bai; Jordan E Bisanz; Kyle Bittinger; Asker Brejnrod; Colin J Brislawn; C Titus Brown; Benjamin J Callahan; Andrés Mauricio Caraballo-Rodríguez; John Chase; Emily K Cope; Ricardo Da Silva; Christian Diener; Pieter C Dorrestein; Gavin M Douglas; Daniel M Durall; Claire Duvallet; Christian F Edwardson; Madeleine Ernst; Mehrbod Estaki; Jennifer Fouquier; Julia M Gauglitz; Sean M Gibbons; Deanna L Gibson; Antonio Gonzalez; Kestrel Gorlick; Jiarong Guo; Benjamin Hillmann; Susan Holmes; Hannes Holste; Curtis Huttenhower; Gavin A Huttley; Stefan Janssen; Alan K Jarmusch; Lingjing Jiang; Benjamin D Kaehler; Kyo Bin Kang; Christopher R Keefe; Paul Keim; Scott T Kelley; Dan Knights; Irina Koester; Tomasz Kosciolek; Jorden Kreps; Morgan G I Langille; Joslynn Lee; Ruth Ley; Yong-Xin Liu; Erikka Loftfield; Catherine Lozupone; Massoud Maher; Clarisse Marotz; Bryan D Martin; Daniel McDonald; Lauren J McIver; Alexey V Melnik; Jessica L Metcalf; Sydney C Morgan; Jamie T Morton; Ahmad Turan Naimey; Jose A Navas-Molina; Louis Felix Nothias; Stephanie B Orchanian; Talima Pearson; Samuel L Peoples; Daniel Petras; Mary Lai Preuss; Elmar Pruesse; Lasse Buur Rasmussen; Adam Rivers; Michael S Robeson; Patrick Rosenthal; Nicola Segata; Michael Shaffer; Arron Shiffer; Rashmi Sinha; Se Jin Song; John R Spear; Austin D Swafford; Luke R Thompson; Pedro J Torres; Pauline Trinh; Anupriya Tripathi; Peter J Turnbaugh; Sabah Ul-Hasan; Justin J J van der Hooft; Fernando Vargas; Yoshiki Vázquez-Baeza; Emily Vogtmann; Max von Hippel; William Walters; Yunhu Wan; Mingxun Wang; Jonathan Warren; Kyle C Weber; Charles H D Williamson; Amy D Willis; Zhenjiang Zech Xu; Jesse R Zaneveld; Yilong Zhang; Qiyun Zhu; Rob Knight; J Gregory Caporaso
Journal:  Nat Biotechnol       Date:  2019-08       Impact factor: 54.908

4.  Bacterial attraction and quorum sensing inhibition in Caenorhabditis elegans exudates.

Authors:  Fatma Kaplan; Dayakar V Badri; Cherian Zachariah; Ramadan Ajredini; Francisco J Sandoval; Sanja Roje; Lanfang H Levine; Fengli Zhang; Steven L Robinette; Hans T Alborn; Wei Zhao; Michael Stadler; Rathika Nimalendran; Aaron T Dossey; Rafael Brüschweiler; Jorge M Vivanco; Arthur S Edison
Journal:  J Chem Ecol       Date:  2009-08-04       Impact factor: 2.626

5.  DADA2: High-resolution sample inference from Illumina amplicon data.

Authors:  Benjamin J Callahan; Paul J McMurdie; Michael J Rosen; Andrew W Han; Amy Jo A Johnson; Susan P Holmes
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

6.  The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model.

Authors:  Philipp Dirksen; Sarah Arnaud Marsh; Ines Braker; Nele Heitland; Sophia Wagner; Rania Nakad; Sebastian Mader; Carola Petersen; Vienna Kowallik; Philip Rosenstiel; Marie-Anne Félix; Hinrich Schulenburg
Journal:  BMC Biol       Date:  2016-05-09       Impact factor: 7.431

7.  Microbiomes associated with infective stages of root-knot and lesion nematodes in soil.

Authors:  Ahmed Elhady; Ariadna Giné; Olivera Topalovic; Samuel Jacquiod; Søren J Sørensen; Francisco Javier Sorribas; Holger Heuer
Journal:  PLoS One       Date:  2017-05-04       Impact factor: 3.240

8.  Culture-independent investigation of the microbiome associated with the nematode Acrobeloides maximus.

Authors:  Jean-Paul Baquiran; Brian Thater; Sammy Sedky; Paul De Ley; David Crowley; Paul M Orwin
Journal:  PLoS One       Date:  2013-07-22       Impact factor: 3.240

9.  Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius.

Authors:  Giles E Budge; Mark D F Shirley; Benjamin Jones; Emiline Quill; Victoria Tomkies; Edward J Feil; Mike A Brown; Edward G Haynes
Journal:  ISME J       Date:  2014-03-06       Impact factor: 10.302

10.  Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

Authors:  Nicholas A Bokulich; Benjamin D Kaehler; Jai Ram Rideout; Matthew Dillon; Evan Bolyen; Rob Knight; Gavin A Huttley; J Gregory Caporaso
Journal:  Microbiome       Date:  2018-05-17       Impact factor: 14.650

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.