Literature DB >> 34549368

Comparing classification models-a practical tutorial.

W Patrick Walters1.   

Abstract

While machine learning models have become a mainstay in Cheminformatics, the field has yet to agree on standards for model evaluation and comparison. In many cases, authors compare methods by performing multiple folds of cross-validation and reporting the mean value for an evaluation metric such as the area under the receiver operating characteristic. These comparisons of mean values often lack statistical rigor and can lead to inaccurate conclusions. In the interest of encouraging best practices, this tutorial provides an example of how multiple methods can be compared in a statistically rigorous fashion.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Classification model; Machine learning; QSAR; Statistical validation; Tutorial

Mesh:

Year:  2021        PMID: 34549368     DOI: 10.1007/s10822-021-00417-2

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   4.179


  5 in total

1.  GHOST: Adjusting the Decision Threshold to Handle Imbalanced Data in Machine Learning.

Authors:  Carmen Esposito; Gregory A Landrum; Nadine Schneider; Nikolaus Stiefl; Sereina Riniker
Journal:  J Chem Inf Model       Date:  2021-06-08       Impact factor: 4.956

Review 2.  Applications of machine learning in drug discovery and development.

Authors:  Jessica Vamathevan; Dominic Clark; Paul Czodrowski; Ian Dunham; Edgardo Ferran; George Lee; Bin Li; Anant Madabhushi; Parantu Shah; Michaela Spitzer; Shanrong Zhao
Journal:  Nat Rev Drug Discov       Date:  2019-06       Impact factor: 84.694

3.  Adding Stochastic Negative Examples into Machine Learning Improves Molecular Bioactivity Prediction.

Authors:  Elena L Cáceres; Nicholas C Mew; Michael J Keiser
Journal:  J Chem Inf Model       Date:  2020-11-27       Impact factor: 4.956

4.  Critical assessment of AI in drug discovery.

Authors:  W Patrick Walters; Regina Barzilay
Journal:  Expert Opin Drug Discov       Date:  2021-04-19       Impact factor: 6.098

Review 5.  Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 2: a discussion of chemical and biological data.

Authors:  Andreas Bender; Isidro Cortes-Ciriano
Journal:  Drug Discov Today       Date:  2021-01-27       Impact factor: 7.851

  5 in total
  1 in total

1.  Scoring Functions for Protein-Ligand Binding Affinity Prediction using Structure-Based Deep Learning: A Review.

Authors:  Rocco Meli; Garrett M Morris; Philip C Biggin
Journal:  Front Bioinform       Date:  2022-06-17
  1 in total

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