| Literature DB >> 34546623 |
Leigh F Johnson1, Azar Kariminia2, Adam Trickey3, Constantin T Yiannoutsos4, Didier K Ekouevi5,6, Albert K Minga7, Ana Roberta Pati Pascom8, Win Min Han2, Lei Zhang3, Keri N Althoff9, Peter F Rebeiro10, Gad Murenzi11, Jonathan Ross12, Nei-Yuan Hsiao13,14, Kimberly Marsh15.
Abstract
INTRODUCTION: The third of the Joint United Nations Programme on HIV/AIDS (UNAIDS) 90-90-90 targets is to achieve a 90% rate of viral suppression (HIV viral load <1000 HIV-1 RNA copies/ml) in patients on antiretroviral treatment (ART) by 2020. However, some countries use different thresholds when reporting viral suppression, and there is thus a need for an adjustment to standardize estimates to the <1000 threshold. We aim to propose such an adjustment, to support consistent monitoring of progress towards the "third 90" target.Entities:
Keywords: HIV; antiretroviral therapy; viral load
Mesh:
Substances:
Year: 2021 PMID: 34546623 PMCID: PMC8454679 DOI: 10.1002/jia2.25776
Source DB: PubMed Journal: J Int AIDS Soc ISSN: 1758-2652 Impact factor: 6.707
Models of viral load distributions in ART patients
| Weibull | Reverse Weibull | Pareto | |
|---|---|---|---|
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Probability of viral load below threshold |
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| Shape parameter |
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Scale parameter, if and shape parameter are known |
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Probability of viral load below threshold if parameter are known |
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| Lower limit | 1 | 0 | ∼5 |
| Upper limit | None | 1,000,000 | None |
Note: For all three models, the shape parameter controls the variance of the distribution of viral loads (a higher shape parameter implies a lower ratio of the standard deviation to the mean). The scale parameter (λ for the Weibull and reverse Weibull models, m for the Pareto model) determines the mean of the distribution (a higher scale parameter implies a higher mean viral load for the Weibull and Pareto models, but a lower mean viral load for the reverse Weibull model). For the Pareto distribution, the lower limit is 10, which in most cohorts is estimated to be around 5 copies/ml.
Figure 1Probability density functions for viral loads in ART patients, under different statistical models.
Probability density functions with different shape parameters are presented for illustrative purposes. In all cases, the λ or m parameter has been set so that the cumulative probability of a viral load less than 1000 copies/ml is the same (0.85). The probability densities are truncated at 50 copies/ml (1.7 on the log10 scale), as different models impose different lower limits, and lower limits below 50 copies/ml have not been used for reporting purposes.
Data summary
| Period | Programme–year combinations | Total viral loadmeasurements | Viral suppression (<1000 copies/ml) | |
|---|---|---|---|---|
| Adult data | ||||
| Asia‐Pacific | 2010–2019 | 13 | 6860 | 97.0% |
| CCASAnet | 2010–2019 | 10 | 32,958 | 90.4% |
| Central Africa | 2016–2019 | 26 | 3600 | 92.6% |
| East Africa | 2013–2019 | 30 | 85,258 | 91.2% |
| North America | 2010–2018 | 117 | 35,168 | 89.3% |
| Southern Africa | 2010–2019 | 54 | 499,112 | 90.1% |
| West Africa | 2010–2018 | 25 | 7446 | 91.7% |
| Europe | 2010–2019 | 74 | 250,755 | 93.9% |
| Total | 349 | 921,157 | 91.6% | |
| Paediatric data | ||||
| Asia‐Pacific | 2010–2019 | 10 | 4811 | 86.6% |
| CCASAnet | 2011–2018 | 8 | 520 | 76.9% |
| Central Africa | 2017–2019 | 3 | 205 | 83.9% |
| East Africa | 2014–2019 | 17 | 7921 | 75.6% |
| Southern Africa | 2010–2019 | 60 | 20,827 | 75.5% |
| West Africa | 2011–2018 | 36 | 3147 | 66.0% |
| Total | 134 | 37,431 | 76.2% | |
Calculated by summing the number of calendar years that each programme contributes data; a separate random effect is fitted for each programme–year combination.
Abbreviation: CCASAnet, Caribbean, Central America and South America network.
Estimates of model parameters
| Weibull model | Reverse Weibull model | Pareto model | ||||
|---|---|---|---|---|---|---|
| Log L | Shape ( | Log L | Shape ( | Log L | Shape ( | |
| Adult data | ||||||
| Asia‐Pacific | –2823 | 0.74 (0.68–0.80) | –2842 | 2.98 (2.91–3.06) |
| 2.12 (1.92–2.33) |
| CCASAnet | –26,621 | 0.84 (0.82–0.86) | –26,408 | 2.86 (2.78–2.94) |
| 1.52 (1.48–1.57) |
| Central Africa | –2510 | 0.80 (0.73–0.87) | –2525 | 3.01 (2.72–3.29) |
| 1.68 (1.51–1.84) |
| East Africa | –82,596 | 1.24 (1.23–1.26) |
| 3.05 (3.05–3.06) | –82,454 | 1.95 (1.92–1.98) |
| North America | –19,173 | 0.76 (0.73–0.79) | –19,191 | 2.31 (2.20–2.41) |
| 1.48 (1.41–1.54) |
| Southern Africa | –144,959 | 0.74 (0.73–0.76) |
| 2.07 (2.03–2.11) | –144,432 | 1.60 (1.56–1.63) |
| West Africa | –4045 | 0.69 (0.63–0.74) | –4051 | 2.52 (2.30–2.74) |
| 1.49 (1.35–1.62) |
| Europe | –151,923 | 0.96 (0.96–0.97) | –152,331 | 3.70 (3.66–3.74) |
| 2.05 (2.02–2.07) |
| Averagea | 0.85 (0.43–1.26) | 2.81 (1.70–3.92) | 1.73 (1.20–2.26) | |||
| Paediatric data | ||||||
| Asia‐Pacific | –2580 | 0.57 (0.49–0.65) | –2585 | 1.48 (1.26–1.71) |
| 1.04 (0.88–1.20) |
| CCASAnet | –527 | 0.64 (0.50–0.78) |
| 1.49 (1.15–1.84) | –527 | 0.77 (0.58–0.95) |
| Central Africa | –187 | 0.72 (0.47–0.97) | –189 | 2.00 (1.27–2.74) |
| 1.08 (0.67–1.49) |
| East Africa | –6893 | 1.04 (0.97–1.11) |
| 2.06 (1.92–2.21) | –6883 | 1.31 (1.22–1.41) |
| Southern Africa | –18,109 | 1.22 (1.18–1.27) |
| 2.32 (2.22–2.41) | –18,000 | 1.29 (1.24–1.35) |
| West Africa | –3379 | 0.89 (0.81–0.96) | –3388 | 1.65 (1.51–1.80) |
| 0.79 (0.72–0.87) |
| Average | 0.85 (0.26–1.45) | 1.84 (1.03–2.64) | 1.05 (0.46–1.64) | |||
Average calculated by meta‐analysis. Log L = log likelihood (values in bold indicate the model that gives the highest log likelihood). 95% confidence intervals around shape parameters are shown in parentheses.
Abbreviation: CCASAnet, Caribbean, Central America and South America network.
Figure 2Validation of the model predictions of viral suppression (at <1000 copies/ml) against data from the WHO HIV Drug Resistance Report (panels a, b) and Brazilian programme data (panels c, d).
In panels a and b, results are presented by country code (GT = Guatemala, HN = Honduras, NI = Nicaragua, VN = Vietnam, ZM = Zambia) and ART duration (in months). Confidence intervals around the validation data are not shown in panels c and d, as these estimates are based on large patient numbers and standard error estimates are <0.1%. Abbreviation: VLS, viral load suppression.
Figure 3Reverse Weibull adjustments, with uncertainty ranges.
In each panel, the solid black line represents the point estimate for the adjusted viral suppression, based on a reported rate of viral suppression at a threshold specified on the x axis. The upper and lower lines represent the uncertainty ranges around the point estimates, calculated from the 95% prediction intervals around the shape parameter. In panel a, the adjusted rates of viral suppression are calculated using the formulas F(t 2) = F(t 1)0.70, F(t 2) = F(t 1)0.81 and F(t 2) = F(t 1)0.61, for shape parameters 2.81, 1.70 and 3.92, respectively, calculated by substituting the relevant shape parameters into the equation for F(t 2). In panel b, the adjusted rates of viral suppression are calculated using the formulas F(t 2) = F(t 1)0.56, F(t 2) = F(t 1)0.70 and F(t 2) = F(t 1)0.44, for shape parameters 2.81, 1.70 and 3.92, respectively, and in panel c, the adjusted rates are calculated using the formulas F(t 2) = F(t 1)0.36, F(t 2) = F(t 1)0.54 and F(t 2) = F(t 1)0.24. Panel d represents an alternative scenario in which viral suppression is reported at a threshold of <1000 copies/ml, but we wish to adjust the reported rate to obtain an estimate of viral suppression at <400 copies/ml; here, the formulas are F(t 2) = F(t 1)1.42, F(t 2) = F(t 1)1.24 and F(t 2) = F(t 1)1.63, respectively. Abbreviation: VLS, viral load suppression.