Literature DB >> 34541240

Immunoprecipitation of Cell Surface Proteins from Gram-negative Bacteria.

Carlos Eduardo Pouey Cunha1,2, Jane Newcombe1, Odir Antonio Dellagostin2, Johnjoe McFadden1.   

Abstract

The meningococcus (Neisseria meningitidis) remains an important threat to human healthworldwide. This Gram-negative bacterium causes elevated disabilities and mortality in infectedindividuals. Despite several available vaccines, currently there is no universal vaccine against allcirculating meningococcal strains ( Vogel et al., 2013 ). Herein, we describe a new protocol that iscapable of identifying only cell surface exposed proteins that play a role in immunity, providing thisresearch field with a more straightforward approach to identify novel vaccine targets. Even though N. meningitidis is used as a model in the protocol herein described, this protocol can be used for anyGram-negative bacteria provided modifications and optimizations are carried out to adapt it to differentbacterial and disease characteristics (e.g., membrane fragility, growth methods, serum antibody levels,etc.).
Copyright © 2017 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Cell surface antigen; Exposed antigen; Gram-negative; Immunoprecipitation; Immunoproteome; Outermembrane protein

Year:  2017        PMID: 34541240      PMCID: PMC8410285          DOI: 10.21769/BioProtoc.2250

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  12 in total

1.  Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions.

Authors:  Chin-Sheng Yu; Chih-Jen Lin; Jenn-Kang Hwang
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

2.  SignalP 4.0: discriminating signal peptides from transmembrane regions.

Authors:  Thomas Nordahl Petersen; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Methods       Date:  2011-09-29       Impact factor: 28.547

3.  Prediction of protein subcellular localization.

Authors:  Chin-Sheng Yu; Yu-Ching Chen; Chih-Hao Lu; Jenn-Kang Hwang
Journal:  Proteins       Date:  2006-08-15

4.  Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides.

Authors:  Kuo-Chen Chou; Hong-Bin Shen
Journal:  Biochem Biophys Res Commun       Date:  2007-04-05       Impact factor: 3.575

5.  Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins.

Authors:  Hong-Bin Shen; Kuo-Chen Chou
Journal:  J Theor Biol       Date:  2010-01-20       Impact factor: 2.691

6.  Predicted strain coverage of a meningococcal multicomponent vaccine (4CMenB) in Europe: a qualitative and quantitative assessment.

Authors:  Ulrich Vogel; Muhamed-Kheir Taha; Julio A Vazquez; Jamie Findlow; Heike Claus; Paola Stefanelli; Dominique A Caugant; Paula Kriz; Raquel Abad; Stefania Bambini; Anna Carannante; Ala Eddine Deghmane; Cecilia Fazio; Matthias Frosch; Giacomo Frosi; Stefanie Gilchrist; Marzia M Giuliani; Eva Hong; Morgan Ledroit; Pietro G Lovaglio; Jay Lucidarme; Martin Musilek; Alessandro Muzzi; Jan Oksnes; Fabio Rigat; Luca Orlandi; Maria Stella; Danielle Thompson; Mariagrazia Pizza; Rino Rappuoli; Davide Serruto; Maurizio Comanducci; Giuseppe Boccadifuoco; John J Donnelly; Duccio Medini; Ray Borrow
Journal:  Lancet Infect Dis       Date:  2013-02-13       Impact factor: 25.071

7.  Exploring the proteome of meningococcal outer membrane vesicle vaccines.

Authors:  Jun X Wheeler; Caroline Vipond; Ian M Feavers
Journal:  Proteomics Clin Appl       Date:  2007-08-17       Impact factor: 3.494

8.  PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

Authors:  Nancy Y Yu; James R Wagner; Matthew R Laird; Gabor Melli; Sébastien Rey; Raymond Lo; Phuong Dao; S Cenk Sahinalp; Martin Ester; Leonard J Foster; Fiona S L Brinkman
Journal:  Bioinformatics       Date:  2010-05-13       Impact factor: 6.937

9.  Identification of the immunoproteome of the meningococcus by cell surface immunoprecipitation and MS.

Authors:  Jane Newcombe; Tom A Mendum; Chuan-peng Ren; Johnjoe McFadden
Journal:  Microbiology       Date:  2013-11-25       Impact factor: 2.777

10.  Towards the immunoproteome of Neisseria meningitidis.

Authors:  Tom A Mendum; Jane Newcombe; Celia L McNeilly; Johnjoe McFadden
Journal:  PLoS One       Date:  2009-06-16       Impact factor: 3.240

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