Literature DB >> 34534441

Modulation of bioelectric cues in the evolution of flying fishes.

Jacob M Daane1, Nicola Blum2, Jennifer Lanni3, Helena Boldt2, M Kathryn Iovine4, Charles W Higdon5, Stephen L Johnson5, Nathan R Lovejoy6, Matthew P Harris7.   

Abstract

Changes to allometry, or the relative proportions of organs and tissues within organisms, is a common means for adaptive character change in evolution. However, little is understood about how relative size is specified during development and shaped during evolution. Here, through a phylogenomic analysis of genome-wide variation in 35 species of flying fishes and relatives, we identify genetic signatures in both coding and regulatory regions underlying the convergent evolution of increased paired fin size and aerial gliding behaviors. To refine our analysis, we intersected convergent phylogenomic signatures with mutants with altered fin size identified in distantly related zebrafish. Through these paired approaches, we identify a surprising role for an L-type amino acid transporter, lat4a, and the potassium channel, kcnh2a, in the regulation of fin proportion. We show that interaction between these genetic loci in zebrafish closely phenocopies the observed fin proportions of flying fishes. The congruence of experimental and phylogenomic findings point to conserved, non-canonical signaling integrating bioelectric cues and amino acid transport in the establishment of relative size in development and evolution.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  allometry; amino acid transport; bioelectric signaling; comparative genomics; convergent evolution; flying fish; kcnh2a; lat4a; size regulation; zebrafish

Mesh:

Substances:

Year:  2021        PMID: 34534441      PMCID: PMC9172250          DOI: 10.1016/j.cub.2021.08.054

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.900


  74 in total

1.  Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies.

Authors:  Jacob M Daane; Nicolas Rohner; Peter Konstantinidis; Sergej Djuranovic; Matthew P Harris
Journal:  Mol Biol Evol       Date:  2015-10-08       Impact factor: 16.240

2.  Identification of selected gamma-ray induced deficiencies in zebrafish using multiplex polymerase chain reaction.

Authors:  A Fritz; M Rozowski; C Walker; M Westerfield
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

3.  Enhancing the efficiency of N-ethyl-N-nitrosourea-induced mutagenesis in the zebrafish.

Authors:  Nicolas Rohner; Simon Perathoner; Hans Georg Frohnhöfer; Matthew P Harris
Journal:  Zebrafish       Date:  2011-08-23       Impact factor: 1.985

4.  Ubiquitous transgene expression and Cre-based recombination driven by the ubiquitin promoter in zebrafish.

Authors:  Christian Mosimann; Charles K Kaufman; Pulin Li; Emily K Pugach; Owen J Tamplin; Leonard I Zon
Journal:  Development       Date:  2011-01       Impact factor: 6.868

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

6.  The Genetic Basis of Morphological Diversity in Domesticated Goldfish.

Authors:  Tetsuo Kon; Yoshihiro Omori; Kentaro Fukuta; Hironori Wada; Masakatsu Watanabe; Zelin Chen; Miki Iwasaki; Tappei Mishina; Shin-Ichiro S Matsuzaki; Daiki Yoshihara; Jumpei Arakawa; Koichi Kawakami; Atsushi Toyoda; Shawn M Burgess; Hideki Noguchi; Takahisa Furukawa
Journal:  Curr Biol       Date:  2020-05-08       Impact factor: 10.834

7.  Loss-of-function mutations in PTPN11 cause metachondromatosis, but not Ollier disease or Maffucci syndrome.

Authors:  Margot E Bowen; Eric D Boyden; Ingrid A Holm; Belinda Campos-Xavier; Luisa Bonafé; Andrea Superti-Furga; Shiro Ikegawa; Valerie Cormier-Daire; Judith V Bovée; Twinkal C Pansuriya; Sérgio B de Sousa; Ravi Savarirayan; Elena Andreucci; Miikka Vikkula; Livia Garavelli; Caroline Pottinger; Toshihiko Ogino; Akinori Sakai; Bianca M Regazzoni; Wim Wuyts; Luca Sangiorgi; Elena Pedrini; Mei Zhu; Harry P Kozakewich; James R Kasser; Jon G Seidman; Kyle C Kurek; Matthew L Warman
Journal:  PLoS Genet       Date:  2011-04-14       Impact factor: 5.917

8.  Phylogenetic classification of bony fishes.

Authors:  Ricardo Betancur-R; Edward O Wiley; Gloria Arratia; Arturo Acero; Nicolas Bailly; Masaki Miya; Guillaume Lecointre; Guillermo Ortí
Journal:  BMC Evol Biol       Date:  2017-07-06       Impact factor: 3.260

9.  Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans.

Authors:  J T Daub; S Moretti; I I Davydov; L Excoffier; M Robinson-Rechavi
Journal:  Mol Biol Evol       Date:  2017-06-01       Impact factor: 16.240

10.  Efficient genome editing in zebrafish using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Shengdar Q Tsai; Jeffry D Sander; Randall T Peterson; J-R Joanna Yeh; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

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  1 in total

1.  Coordinated patterning of zebrafish caudal fin symmetry by a central and two peripheral organizers.

Authors:  Thomas Desvignes; Amy E Robbins; Andrew Z Carey; Raisa Bailon-Zambrano; James T Nichols; John H Postlethwait; Kryn Stankunas
Journal:  Dev Dyn       Date:  2022-04-22       Impact factor: 2.842

  1 in total

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