Literature DB >> 34533311

Generative Models for De Novo Drug Design.

Xiaochu Tong1,2, Xiaohong Liu1,2, Xiaoqin Tan1,2, Xutong Li1,2, Jiaxin Jiang1, Zhaoping Xiong3, Tingyang Xu4, Hualiang Jiang1,2, Nan Qiao3, Mingyue Zheng1,2.   

Abstract

Artificial intelligence (AI) is booming. Among various AI approaches, generative models have received much attention in recent years. Inspired by these successes, researchers are now applying generative model techniques to de novo drug design, which has been considered as the "holy grail" of drug discovery. In this Perspective, we first focus on describing models such as recurrent neural network, autoencoder, generative adversarial network, transformer, and hybrid models with reinforcement learning. Next, we summarize the applications of generative models to drug design, including generating various compounds to expand the compound library and designing compounds with specific properties, and we also list a few publicly available molecular design tools based on generative models which can be used directly to generate molecules. In addition, we also introduce current benchmarks and metrics frequently used for generative models. Finally, we discuss the challenges and prospects of using generative models to aid drug design.

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Year:  2021        PMID: 34533311     DOI: 10.1021/acs.jmedchem.1c00927

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  5 in total

1.  Contemporary Computational Applications and Tools in Drug Discovery.

Authors:  Philip B Cox; Rishi Gupta
Journal:  ACS Med Chem Lett       Date:  2022-06-01       Impact factor: 4.632

2.  Artificial intelligence in interdisciplinary life science and drug discovery research.

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Journal:  Future Sci OA       Date:  2022-03-08

Review 3.  Defining Levels of Automated Chemical Design.

Authors:  Brian Goldman; Steven Kearnes; Trevor Kramer; Patrick Riley; W Patrick Walters
Journal:  J Med Chem       Date:  2022-05-05       Impact factor: 8.039

4.  Computational analysis, alignment and extension of analogue series from medicinal chemistry.

Authors:  Atsushi Yoshimori; Jürgen Bajorath
Journal:  Future Sci OA       Date:  2022-06-28

5.  Exploration and augmentation of pharmacological space via adversarial auto-encoder model for facilitating kinase-centric drug development.

Authors:  Xinyu Bai; Yuxin Yin
Journal:  J Cheminform       Date:  2021-12-06       Impact factor: 5.514

  5 in total

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