Literature DB >> 3453212

HOMED: a homologous sequence editor.

P A Stockwell1, G B Petersen.   

Abstract

The alignment of homologous sequences with each other and their display has proved a difficult task, despite a frequent requirement for this process. HOMED enables related sequences to be edited and listed in parallel with each other. The editor function uses a full screen editor which emulates the text editors KED and EDT (on PDP-11 and VAX-11 respectively) and which can be adapted to emulate other text editors. This emulation has been adopted to simplify user learning of editing functions. HOMED provides functions for listing the sequences in a variety of formats and for generating a consensus sequence as well as providing a series of tools for maintenance of the sequence database. HOMED has been implemented in Pascal in a modular fashion to enhance portability.

Mesh：

Year:  1987        PMID： 3453212     DOI： 10.1093/bioinformatics/3.1.37

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  10 in total

1.  Phylogenetic relationships among transposon-like elements in human and primate DNA.

Authors:  J C McNaughton; C J Marshall; J E Broom; G Hughes; W A Jones; P A Stockwell; G B Petersen
Journal:  J Mol Evol       Date:  1995-02       Impact factor: 2.395

2.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

3.  pCal, a highly unusual Ty1/copia retrotransposon from the pathogenic yeast Candida albicans.

Authors:  G D Matthews; T J Goodwin; M I Butler; T A Berryman; R T Poulter
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

4.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

5.  Homologs of vascular endothelial growth factor are encoded by the poxvirus orf virus.

Authors:  D J Lyttle; K M Fraser; S B Fleming; A A Mercer; A J Robinson
Journal:  J Virol       Date:  1994-01       Impact factor: 5.103

6.  Evolutionary relationships of multiple alpha satellite subfamilies in the centromeres of human chromosomes 13, 14, and 21.

Authors:  B Vissel; K H Choo
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

7.  Evolution of the primate lentiviruses: evidence from vpx and vpr.

Authors:  M Tristem; C Marshall; A Karpas; F Hill
Journal:  EMBO J       Date:  1992-09       Impact factor: 11.598

8.  Unsupervised clustering of gene expression data points at hypoxia as possible trigger for metabolic syndrome.

Authors:  Andrey Ptitsyn; Matthew Hulver; William Cefalu; David York; Steven R Smith
Journal:  BMC Genomics       Date:  2006-12-19       Impact factor: 3.969

Review 9.  IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments.

Authors:  Muhammad Tariq Pervez; Masroor Ellahi Babar; Asif Nadeem; Naeem Aslam; Nasir Naveed; Sarfraz Ahmad; Shah Muhammad; Salman Qadri; Muhammad Shahid; Tanveer Hussain; Maryam Javed
Journal:  Evol Bioinform Online       Date:  2015-03-12       Impact factor: 1.625

10.  Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).

Authors:  Andrew C R Martin
Journal:  F1000Res       Date:  2014-10-23
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.