Literature DB >> 34520194

Harnessing the E3 Ligase KEAP1 for Targeted Protein Degradation.

Jieli Wei1, Fanye Meng1, Kwang-Su Park1, Hyerin Yim1, Julia Velez1, Prashasti Kumar1, Li Wang2, Ling Xie2, He Chen1, Yudao Shen1, Emily Teichman1, Dongxu Li2,3, Gang Greg Wang2,3, Xian Chen2, H Ümit Kaniskan1, Jian Jin1.   

Abstract

Proteolysis targeting chimeras (PROTACs) represent a new class of promising therapeutic modalities. PROTACs hijack E3 ligases and the ubiquitin-proteasome system (UPS), leading to selective degradation of the target proteins. However, only a very limited number of E3 ligases have been leveraged to generate effective PROTACs. Herein, we report that the KEAP1 E3 ligase can be harnessed for targeted protein degradation utilizing a highly selective, noncovalent small-molecule KEAP1 binder. We generated a proof-of-concept PROTAC, MS83, by linking the KEAP1 ligand to a BRD4/3/2 binder. MS83 effectively reduces protein levels of BRD4 and BRD3, but not BRD2, in cells in a concentration-, time-, KEAP1- and UPS-dependent manner. Interestingly, MS83 degrades BRD4/3 more durably than the CRBN-recruiting PROTAC dBET1 in MDA-MB-468 cells and selectively degrades BRD4 short isoform over long isoform in MDA-MB-231 cells. It also displays improved antiproliferative activity than dBET1. Overall, our study expands the limited toolbox for targeted protein degradation.

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Year:  2021        PMID: 34520194      PMCID: PMC8480205          DOI: 10.1021/jacs.1c04841

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   16.383


  29 in total

1.  Keap1 is a redox-regulated substrate adaptor protein for a Cul3-dependent ubiquitin ligase complex.

Authors:  Donna D Zhang; Shih-Ching Lo; Janet V Cross; Dennis J Templeton; Mark Hannink
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

2.  DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation.

Authors:  Georg E Winter; Dennis L Buckley; Joshiawa Paulk; Justin M Roberts; Amanda Souza; Sirano Dhe-Paganon; James E Bradner
Journal:  Science       Date:  2015-05-21       Impact factor: 47.728

3.  Monoacidic Inhibitors of the Kelch-like ECH-Associated Protein 1: Nuclear Factor Erythroid 2-Related Factor 2 (KEAP1:NRF2) Protein-Protein Interaction with High Cell Potency Identified by Fragment-Based Discovery.

Authors:  Thomas G Davies; William E Wixted; Joseph E Coyle; Charlotte Griffiths-Jones; Keisha Hearn; Rachel McMenamin; David Norton; Sharna J Rich; Caroline Richardson; Gordon Saxty; Henriëtte M G Willems; Alison J-A Woolford; Joshua E Cottom; Jen-Pyng Kou; John G Yonchuk; Heidi G Feldser; Yolanda Sanchez; Joseph P Foley; Brian J Bolognese; Gregory Logan; Patricia L Podolin; Hongxing Yan; James F Callahan; Tom D Heightman; Jeffrey K Kerns
Journal:  J Med Chem       Date:  2016-04-12       Impact factor: 7.446

4.  Roles of the BRD4 short isoform in phase separation and active gene transcription.

Authors:  Xinye Han; Di Yu; Ruirui Gu; Yanjie Jia; Qi Wang; Anbalagan Jaganathan; Xuelan Yang; Miaomiao Yu; Nicolas Babault; Chengcheng Zhao; Huanfa Yi; Qiang Zhang; Ming-Ming Zhou; Lei Zeng
Journal:  Nat Struct Mol Biol       Date:  2020-03-16       Impact factor: 15.369

5.  Discovery of a Keap1-dependent peptide PROTAC to knockdown Tau by ubiquitination-proteasome degradation pathway.

Authors:  Mengchen Lu; Tian Liu; Qiong Jiao; Jianai Ji; Mengmin Tao; Yijun Liu; Qidong You; Zhengyu Jiang
Journal:  Eur J Med Chem       Date:  2018-02-04       Impact factor: 6.514

6.  Targeted protein degradation: expanding the toolbox.

Authors:  Matthieu Schapira; Matthew F Calabrese; Alex N Bullock; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2019-10-30       Impact factor: 84.694

7.  Discovery of a first-in-class EZH2 selective degrader.

Authors:  Anqi Ma; Elias Stratikopoulos; Kwang-Su Park; Jieli Wei; Tiphaine C Martin; Xiaobao Yang; Megan Schwarz; Violetta Leshchenko; Alexander Rialdi; Brandon Dale; Alessandro Lagana; Ernesto Guccione; Samir Parekh; Ramon Parsons; Jian Jin
Journal:  Nat Chem Biol       Date:  2019-12-09       Impact factor: 15.040

8.  Catalytic in vivo protein knockdown by small-molecule PROTACs.

Authors:  Daniel P Bondeson; Alina Mares; Ian E D Smith; Eunhwa Ko; Sebastien Campos; Afjal H Miah; Katie E Mulholland; Natasha Routly; Dennis L Buckley; Jeffrey L Gustafson; Nico Zinn; Paola Grandi; Satoko Shimamura; Giovanna Bergamini; Maria Faelth-Savitski; Marcus Bantscheff; Carly Cox; Deborah A Gordon; Ryan R Willard; John J Flanagan; Linda N Casillas; Bartholomew J Votta; Willem den Besten; Kristoffer Famm; Laurens Kruidenier; Paul S Carter; John D Harling; Ian Churcher; Craig M Crews
Journal:  Nat Chem Biol       Date:  2015-06-10       Impact factor: 15.040

Review 9.  The emerging family of CULLIN3-RING ubiquitin ligases (CRL3s): cellular functions and disease implications.

Authors:  Pascal Genschik; Izabela Sumara; Esther Lechner
Journal:  EMBO J       Date:  2013-08-02       Impact factor: 11.598

10.  Structure of the BTB domain of Keap1 and its interaction with the triterpenoid antagonist CDDO.

Authors:  Anne Cleasby; Jeff Yon; Philip J Day; Caroline Richardson; Ian J Tickle; Pamela A Williams; James F Callahan; Robin Carr; Nestor Concha; Jeffrey K Kerns; Hongwei Qi; Thomas Sweitzer; Paris Ward; Thomas G Davies
Journal:  PLoS One       Date:  2014-06-04       Impact factor: 3.240

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  8 in total

1.  Encoding BRAF inhibitor functions in protein degraders.

Authors:  Daniel S J Miller; Sabine A Voell; Izidor Sosič; Matic Proj; Olivia W Rossanese; Gregor Schnakenburg; Michael Gütschow; Ian Collins; Christian Steinebach
Journal:  RSC Med Chem       Date:  2022-05-05

Review 2.  Novel Design Strategies to Enhance the Efficiency of Proteolysis Targeting Chimeras.

Authors:  Chunlong Zhao; Frank J Dekker
Journal:  ACS Pharmacol Transl Sci       Date:  2022-08-22

Review 3.  PROTACs: Current Trends in Protein Degradation by Proteolysis-Targeting Chimeras.

Authors:  Jyotsana Madan; Vijay Kamal Ahuja; Kamal Dua; Susanta Samajdar; Murali Ramchandra; Sanjeev Giri
Journal:  BioDrugs       Date:  2022-09-13       Impact factor: 7.744

Review 4.  PROTACs: great opportunities for academia and industry (an update from 2020 to 2021).

Authors:  Ming He; Chaoguo Cao; Zhihao Ni; Yongbo Liu; Peilu Song; Shuang Hao; Yuna He; Xiuyun Sun; Yu Rao
Journal:  Signal Transduct Target Ther       Date:  2022-06-09

Review 5.  Proteolysis-targeting chimera (PROTAC) delivery system: advancing protein degraders towards clinical translation.

Authors:  Yu Chen; Ira Tandon; William Heelan; Yixin Wang; Weiping Tang; Quanyin Hu
Journal:  Chem Soc Rev       Date:  2022-07-04       Impact factor: 60.615

Review 6.  Discovery of E3 Ligase Ligands for Target Protein Degradation.

Authors:  Jaeseok Lee; Youngjun Lee; Young Mee Jung; Ju Hyun Park; Hyuk Sang Yoo; Jongmin Park
Journal:  Molecules       Date:  2022-10-02       Impact factor: 4.927

7.  Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry.

Authors:  Tom Dixon; Derek MacPherson; Barmak Mostofian; Taras Dauzhenka; Samuel Lotz; Dwight McGee; Sharon Shechter; Utsab R Shrestha; Rafal Wiewiora; Zachary A McDargh; Fen Pei; Rajat Pal; João V Ribeiro; Tanner Wilkerson; Vipin Sachdeva; Ning Gao; Shourya Jain; Samuel Sparks; Yunxing Li; Alexander Vinitsky; Xin Zhang; Asghar M Razavi; István Kolossváry; Jason Imbriglio; Artem Evdokimov; Louise Bergeron; Wenchang Zhou; Jagat Adhikari; Benjamin Ruprecht; Alex Dickson; Huafeng Xu; Woody Sherman; Jesus A Izaguirre
Journal:  Nat Commun       Date:  2022-10-06       Impact factor: 17.694

Review 8.  PROTAC targeted protein degraders: the past is prologue.

Authors:  Miklós Békés; David R Langley; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2022-01-18       Impact factor: 112.288

  8 in total

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