| Literature DB >> 34515852 |
Michelle M Florentine1,2, Stephanie L Rouse1, Jihyun Stephans1,3, David Conrad1,3, Josephine Czechowicz1,3, Ian R Matthews1, Anna K Meyer1,3, Garani S Nadaraja1,3, Rajan Parikh1, Jordan Virbalas1,3, Jacqueline E Weinstein1,3, Dylan K Chan4,5.
Abstract
Understanding racial and ethnic disparities in diagnostic rates of genetic testing is critical for health equity. We sought to understand the extent and cause of racial and ethnic disparities in diagnostic efficacy of comprehensive genetic testing (CGT) for sensorineural hearing loss (SNHL). We performed a retrospective cohort study at two tertiary children's hospitals on a diverse cohort of 240 consecutive pediatric patients (76% publicly insured, 82% non-White) with SNHL of unknown etiology who underwent CGT. Definite and possible genetic diagnoses were assigned for each patient, representing the likelihood of a genetic cause of hearing loss. Associations between diagnostic rates were examined. 3.8 ± 2.1 variants were detected per patient; this frequency did not vary between White/Asian and Hispanic/Black cohorts. Overall, 82% of variants were variants of uncertain significance (VUS). Compared with White and Asian subjects, variants identified among Hispanic and Black children were less likely to be classified as pathogenic/likely pathogenic (15% vs. 24%, p < 0.001), and Hispanic and Black children were less likely to have a definite genetic diagnosis (10% vs. 37%, p < 0.001). The adjusted odds ratio for definite genetic diagnosis in Black and Hispanic children compared with White and Asian children was 0.19. Expanding genetic diagnostic criteria to include predicted deleterious VUSs reduced these disparities between White/Asian and Hispanic/Black children, with comparable molecular diagnostic rates (41% vs. 38%, p = 0.72). However, in silico predictions are insufficiently valid for clinical use. Increased inclusion of underrepresented groups in genetic hearing-loss studies to clinically validate these variants is necessary to reduce racial and ethnic disparities in diagnostic efficacy of comprehensive genetic testing.Entities:
Mesh:
Year: 2021 PMID: 34515852 PMCID: PMC9035005 DOI: 10.1007/s00439-021-02338-4
Source DB: PubMed Journal: Hum Genet ISSN: 0340-6717 Impact factor: 5.881
Fig. 1Study population demographic and clinical characteristics. A. Blue shading and numbers reported in individual boxes indicate the number of patients with the paired criteria delineated by row and column. B. Categorical variables were reported as both a number and percentage. Descriptive analysis of continuous variables is reported as a mean and standard deviation for normally distributed variables
Comparison of clinical characteristics across racial and ethnic groups with reported p value of one-way ANOVA
| White | Black | Asian | Hispanic | Other/unknown | ||
|---|---|---|---|---|---|---|
| % Bilateral | 78.6 | 80.0 | 80.8 | 80.2 | 76.7 | 0.99 |
| % Severe/profound | 28.6 | 26.7 | 21.2 | 23.8 | 33.3 | 0.40 |
| % Congenital | 50.0 | 40.0 | 28.9 | 33.7 | 33.3 | < 0.001 |
| % With comorbidities | 23.8 | 26.7 | 5.8 | 19.8 | 20.0 | 0.12 |
Fig. 2Definite genetic diagnostic rate. A. Distribution of definite genetic diagnoses (Patient MD = 4) across race/ethnicity groups. Definite genetic diagnostic rate was compared by ANOVA between dichotomized race/ethnicity groups (White/Asian and Black/Hispanic). B. Distribution of definite genetic diagnosis across insurance, sex, racial-ethnic group, onset, severity, laterality, and inheritance characteristics. Coloring/shading is indicative of difference of diagnostic rate from the average diagnostic rate adjusted by row: orange indicates below the average diagnostic rate for patients with the characteristic defined by the row, white indicates a diagnostic rate average for patients with the characteristic defined by the row, and blue indicates higher diagnostic rate for patients with the characteristic defined by the row. Numbers in boxes indicate the number of patients who received a definite genetic diagnosis, defined as Patient MD of 4, with paired characteristics of the column and row
Fig. 3Variant distribution. A. Mean number of variants identified per child across race/ethnicity groups with reported p-value of ANOVA for mean number of variants vs dichotomized race/ethnicity (White/Asian and Black/Hispanic). B. Known Variant rate. Left: Distribution of Known Variants across race/ethnicity groups. Known Variant rate was compared by ANOVA between dichotomized race/ethnicity groups (White/Asian and Black/Hispanic). Right: Distribution of Known Variants across characteristics is shown. Color scheme is as described in Fig 2. C. Predicted deleterious VUS rate. Left: Distribution of predicted deleterious VUSs (by PROVEAN prediction) across race/ethnicity groups. Deleterious VUS rate was compared by ANOVA between dichotomized race/ethnicity groups (White/Asian and Black/Hispanic). Right: Distribution of deleterious VUSs across characteristics is shown. Color scheme is as described in Fig 2
Fig. 4Possible genetic diagnostic rate. A. Distribution of possible genetic diagnoses (Patient MD = 3) across race/ethnicity groups. Possible genetic diagnostic rate was compared by ANOVA between dichotomized race/ethnicity groups (White/Asian and Black/Hispanic). B. Distribution of possible genetic diagnosis across characteristics is shown. Color scheme is as described in Fig. 2
Comparison of genetic outcomes and clinical characteristics between URM (Black and Hispanic) and control (Asian and White) groups
| White/Asian | Black/Hispanic | ||
|---|---|---|---|
| Number of variants per child (mean, SD) | 3.8 (2.1) | 3.6 (2.1) | 0.47 |
| % P/LP variants | 23.6 | 15.1 | 0.002 |
| VUS (%) | 76.4 | 84.9 | < 0.001 |
| % of VUSs that are predicted deleterious | 38.7 | 38.1 | 0.78 |
| Definite genetic diagnosis (%) | 37.1 | 10.3 | < 0.001 |
| Possible genetic diagnosis (%) | 41 | 38.1 | 0.72 |
| % Bilateral | 79.6 | 80.1 | 1.00 |
| % Severe/profound | 23.7 | 24.5 | 0.55 |
| % Congenital | 37.3 | 31.6 | 0.60 |
| % With comorbidities | 15.5 | 20.5 | 0.34 |
| % Publicly insured | 68.1 | 88.4 | < 0.001 |
| % Non-English-speaking | 42.0 | 46.2 | 0.26 |
p values from one-way ANOVA
Logistic regression analysis of definite and possible genetic diagnosis with clinical and demographic covariates, including URM status (URM (Black or Hispanic) vs. control (Asian or White), primary home language, hearing-loss laterality, hearing-loss onset, baseline hearing-loss level, and presence of comorbidities
| Definite genetic diagnosis | |||
|---|---|---|---|
| Odds ratio | 95% CI | ||
| Race/ethnicity (URM re: control) | 0.19 | (0.09–0.41) | |
| Language (non-English re: English) | 0.62 | 0.25 | (0.27–1.40) |
| Laterality (unilateral re: bilateral) | 0.28 | (0.08–0.89) | |
| Onset (post-natal re: congenital) | 1.67 | 0.26 | (0.68–1.50) |
| Hearing level (severe–profound re: mild–moderate) | 0.63 | 0.30 | (0.26–1.50) |
| Comorbidities (present re: absent) | 0.31 | (0.10–1.00) | |
The reference level “re:” is indicated for each variable. Results include the odds ratio, 95% confidence interval, and p values
Bold values indicate statistically significant associations (p < 0.05)