Literature DB >> 34514753

Discovery of potential biomarkers for human atherosclerotic abdominal aortic aneurysm through untargeted metabolomics and transcriptomics.

Lei Ji1, Siliang Chen2, Guangchao Gu1, Wei Wang1, Jinrui Ren1, Fang Xu1, Fangda Li1, Jianqiang Wu3, Dan Yang4, Yuehong Zheng5.   

Abstract

Abdominal aortic aneurysm (AAA) and atherosclerosis (AS) have considerable similarities in clinical risk factors and molecular pathogenesis. The aim of our study was to investigate the differences between AAA and AS from the perspective of metabolomics, and to explore the potential mechanisms of differential metabolites via integration analysis with transcriptomics. Plasma samples from 32 AAA and 32 AS patients were applied to characterize the metabolite profiles using untargeted liquid chromatography-mass spectrometry (LC-MS). A total of 18 remarkably different metabolites were identified, and a combination of seven metabolites could potentially serve as a biomarker to distinguish AAA and AS, with an area under the curve (AUC) of 0.93. Subsequently, we analyzed both the metabolomics and transcriptomics data and found that seven metabolites, especially 2'-deoxy-D-ribose (2dDR), were significantly correlated with differentially expressed genes. In conclusion, our study presents a comprehensive landscape of plasma metabolites in AAA and AS patients, and provides a research direction for pathogenetic mechanisms in atherosclerotic AAA.

Entities:  

Keywords:  Abdominal aortic aneurysm (AAA); Atherosclerosis (AS); Transcriptomics; Untargeted metabolomics

Mesh:

Substances:

Year:  2021        PMID: 34514753      PMCID: PMC8435341          DOI: 10.1631/jzus.B2000713

Source DB:  PubMed          Journal:  J Zhejiang Univ Sci B        ISSN: 1673-1581            Impact factor:   3.066


  50 in total

1.  Pathogenesis of abdominal aortic aneurysms: a multidisciplinary research program supported by the National Heart, Lung, and Blood Institute.

Authors:  M Wassef; B T Baxter; R L Chisholm; R L Dalman; M F Fillinger; J Heinecke; J D Humphrey; H Kuivaniemi; W C Parks; W H Pearce; C D Platsoucas; G K Sukhova; R W Thompson; M D Tilson; C K Zarins
Journal:  J Vasc Surg       Date:  2001-10       Impact factor: 4.268

2.  Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry.

Authors:  Warwick B Dunn; David Broadhurst; Paul Begley; Eva Zelena; Sue Francis-McIntyre; Nadine Anderson; Marie Brown; Joshau D Knowles; Antony Halsall; John N Haselden; Andrew W Nicholls; Ian D Wilson; Douglas B Kell; Royston Goodacre
Journal:  Nat Protoc       Date:  2011-06-30       Impact factor: 13.491

3.  Metabolomics: the chemistry between ecology and genetics.

Authors:  Mirka Macel; Nicole M Van Dam; Joost J B Keurentjes
Journal:  Mol Ecol Resour       Date:  2010-03-30       Impact factor: 7.090

Review 4.  The Emerging Role of Metabolomics in the Diagnosis and Prognosis of Cardiovascular Disease.

Authors:  John R Ussher; Sammy Elmariah; Robert E Gerszten; Jason R B Dyck
Journal:  J Am Coll Cardiol       Date:  2016-12-27       Impact factor: 24.094

Review 5.  Expectations, validity, and reality in gene expression profiling.

Authors:  Kyoungmi Kim; Stanislav O Zakharkin; David B Allison
Journal:  J Clin Epidemiol       Date:  2010-06-25       Impact factor: 6.437

6.  Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.

Authors:  Xinmin S Li; Zeneng Wang; Tomas Cajka; Jennifer A Buffa; Ina Nemet; Alex G Hurd; Xiaodong Gu; Sarah M Skye; Adam B Roberts; Yuping Wu; Lin Li; Christopher J Shahen; Matthew A Wagner; Jaana A Hartiala; Robert L Kerby; Kymberleigh A Romano; Yi Han; Slayman Obeid; Thomas F Lüscher; Hooman Allayee; Federico E Rey; Joseph A DiDonato; Oliver Fiehn; W H Wilson Tang; Stanley L Hazen
Journal:  JCI Insight       Date:  2018-03-22

Review 7.  TMAO: A small molecule of great expectations.

Authors:  Marcin Ufnal; Anna Zadlo; Ryszard Ostaszewski
Journal:  Nutrition       Date:  2015-06-01       Impact factor: 4.008

Review 8.  Molecular mediators of angiogenesis.

Authors:  Areck A Ucuzian; Andrew A Gassman; Andrea T East; Howard P Greisler
Journal:  J Burn Care Res       Date:  2010 Jan-Feb       Impact factor: 1.845

9.  Suggested standards for reporting on arterial aneurysms. Subcommittee on Reporting Standards for Arterial Aneurysms, Ad Hoc Committee on Reporting Standards, Society for Vascular Surgery and North American Chapter, International Society for Cardiovascular Surgery.

Authors:  K W Johnston; R B Rutherford; M D Tilson; D M Shah; L Hollier; J C Stanley
Journal:  J Vasc Surg       Date:  1991-03       Impact factor: 4.268

10.  Differential gene expression in human abdominal aortic aneurysm and aortic occlusive disease.

Authors:  Erik Biros; Gabor Gäbel; Corey S Moran; Charlotte Schreurs; Jan H N Lindeman; Philip J Walker; Maria Nataatmadja; Malcolm West; Lesca M Holdt; Irene Hinterseher; Christian Pilarsky; Jonathan Golledge
Journal:  Oncotarget       Date:  2015-05-30
View more
  2 in total

1.  Effect of the Interaction between Viral PB2 and Host SphK1 on H9N2 AIV Replication in Mammals.

Authors:  Yong Zhou; Weihua Gao; Yan Sun; Yuxin Guo; Yuping Wu; Juan Pu
Journal:  Viruses       Date:  2022-07-21       Impact factor: 5.818

2.  Preservation of Smooth Muscle Cell Integrity and Function: A Target for Limiting Abdominal Aortic Aneurysm Expansion?

Authors:  Emily R Clark; Rebecca J Helliwell; Marc A Bailey; Karen E Hemmings; Katherine I Bridge; Kathryn J Griffin; D Julian A Scott; Louise M Jennings; Kirsten Riches-Suman; Karen E Porter
Journal:  Cells       Date:  2022-03-19       Impact factor: 6.600

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.