| Literature DB >> 34512711 |
Songling Han1,2, Wei Zhu1,3, Weili Yang4, Qijie Guan2, Chao Chen4, Qiang He5, Zhuoheng Zhong2, Ruoke Zhao2, Hangming Xiong2, Haote Han1, Yaohan Li2, Zijian Sun2, Xingjiang Hu6, Jingkui Tian1,2.
Abstract
BACKGROUND: Stomach adenocarcinoma (STAD) is the most common histological type of stomach cancer, which causes a considerable number of deaths worldwide. This study aimed to identify its potential biomarkers with the notion of revealing the underlying molecular mechanisms.Entities:
Keywords: Gene Expression Omnibus; bioinformatics analysis; biomarker; differentially expressed genes; stomach adenocarcinoma
Year: 2021 PMID: 34512711 PMCID: PMC8427509 DOI: 10.3389/fgene.2021.646818
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Volcano plots of DEGs in the three GEO datasets and functional enrichment of DEGs. (A) DEGs of the GSE118916 dataset. (B) DEGs of the GSE103036 dataset. (C) DEGs of the GSE13861 dataset. (D) Statistics of functional enrichment. CC represents cellular component, MF represents molecular function, and BP represents biological process.
FIGURE 2The prognostic value of key genes in the overall survival of stomach adenocarcinoma (STAD) patients. (A) DPT. (B) ECT2. (C) LRFN4. (D) COL5A2. (E) CTHRC1. The red lines signified individuals with high expression of gene and blue lines denoted those with low expression.
Prognostic value detection of the five genes in TCGA-STAD dataset.
| Gene symbol | HR | HR.95L | HR.95H | |
|
| 0.825131 | 0.696212 | 0.977922 | 0.026587 |
|
| 1.231445 | 1.05985 | 1.430822 | 0.006544 |
|
| 1.205681 | 1.065017 | 1.364924 | 0.003125 |
|
| 0.900176 | 0.766669 | 1.056933 | 0.199163 |
|
| 1.09165 | 0.977869 | 1.21867 | 0.118414 |
FIGURE 3Prognostic value detection of LRFN4 and CTHRC1 via multivariate Cox regression analysis in patients with STAD of TCGA dataset. (A) Multivariate Cox regression analysis of LRFN4 and CTHRC1. (B) Survival analysis of the high-risk group and the low-risk group in the TCGA dataset. (C) Risk score in early stage and advanced stage of STAD in TCGA sets. (D–F) ROC curve of the prognostic signature in the TCGA dataset.
FIGURE 4Multivariate Cox regression analysis of clinicopathologic factors and risk score for STAD in TCGA sets.
FIGURE 5Evaluation of prognostic signature for over survival in the GEO dataset. (A) Survival analysis of the high-risk group and the low-risk group in the GEO dataset. (B–D) ROC curve of the prognostic signature in the GEO dataset.
FIGURE 6Estimation of the tumor microenvironment in the TCGA dataset. (A) Differences in 22 human immune cell phenotypes infiltration between the high- and low-risk groups. Correlations between HAVCR2 (B), PDCD1LG2 (C), and risk score in the TCGA dataset. Comparison of the HAVCR2 (D) and PDCD1LG2 (E) in low- and high-risk patients in the TCGA dataset.
FIGURE 7Significantly enriched signal pathway in patients with high risk compared with patients with low risk in the TCGA dataset. The significantly enriched KEGG pathways include asthma (A), ecm receptor interaction (B), glycosphingolipid biosynthesis ganglio series (C), and systemic lupus erythematosus (D).
FIGURE 8Verification of the expression of LRFN4 and CTHRC1. Expression of LRFN4 (A) and CTHRC1 (B) in the TCGA dataset. qRT-PCR validation of the expression of LRFN4 (C) and CTHRC1 (D).