| Literature DB >> 34512030 |
Chang Yan1, De-Song Shen1, Xiao-Bo Chen2, Dan-Ke Su3, Zhong-Guo Liang1, Kai-Hua Chen1, Ling Li1, Xia Liang1, Hai Liao3, Xiao-Dong Zhu1,4.
Abstract
PURPOSE: We aimed to construct of a nomogram to predict progression-free survival (PFS) in locoregionally advanced nasopharyngeal carcinoma (LA-NPC) with risk stratification using computed tomography (CT) radiomics features and clinical factors. PATIENTS AND METHODS: A total of 311 patients diagnosed with LA-NPC (stage III-IVa) at our hospital between 2010 and 2014 were included. The region of interest (ROI) of the primary nasopharyngeal mass was manually outlined. Independent sample t-test and LASSO-logistic regression were used for selecting the most predictive radiomics features of PFS, and to generate a radiomics signature. A nomogram was built with clinical factors and radiomics features, and the risk stratification model was tested accordingly.Entities:
Keywords: computed tomography; locoregionally advanced nasopharyngeal carcinoma; nomogram; radiomics
Year: 2021 PMID: 34512030 PMCID: PMC8423413 DOI: 10.2147/CMAR.S325373
Source DB: PubMed Journal: Cancer Manag Res ISSN: 1179-1322 Impact factor: 3.989
Characteristics of Patients with LA-NPC in the Training and Validation Cohorts
| Clinical Factors | Total Set | Training Set | Validation Set | ||
|---|---|---|---|---|---|
| (N = 311) | (N = 218) | (N = 93) | |||
| Age | 44.67±10.25 | 45.39±10.29 | 42.99±10.01 | 0.059 | |
| Gender | Male | 234 (75.2%) | 164 (75.2%) | 70 (75.3%) | 1 |
| Female | 77 (24.8%) | 54 (24.8%) | 23 (24.7%) | ||
| Smoking | No | 203 (65.3%) | 143 (65.6%) | 60 (64.5%) | 0.958 |
| Yes | 108 (34.7%) | 75 (34.4%) | 33 (35.5%) | ||
| Family history of NPC | No | 283 (91.0%) | 196 (89.9%) | 87 (93.5%) | 0.418 |
| Yes | 28 (9.0%) | 22 (10.1%) | 6 (6.5%) | ||
| T stage | T1 | 5 (1.6%) | 3 (1.4%) | 2 (2.2%) | 0.701 |
| T2 | 56 (18.0%) | 40 (18.3%) | 16 (17.2%) | ||
| T3 | 159 (51.1%) | 115 (52.8%) | 44 (47.3%) | ||
| T4 | 91 (29.3%) | 60 (27.5%) | 31 (33.3%) | ||
| N stage | N0 | 4 (1.3%) | 1 (0.5%) | 3 (3.2%) | 0.091 |
| N1 | 125 (40.2%) | 85 (39.0%) | 40 (43.0%) | ||
| N2 | 153 (49.2%) | 114 (52.3%) | 39 (41.9%) | ||
| N3 | 29 (9.3%) | 18 (8.3%) | 11 (11.8%) | ||
| Clinical stage | C3 | 199 (64.0%) | 145 (66.5%) | 54 (58.1%) | 0.196 |
| C4 | 112 (36.0%) | 73 (33.5%) | 39 (41.9%) | ||
| Treatment | CCRT | 143 (46.0%) | 101 (46.3%) | 42 (45.2%) | 0.448 |
| IC+CCRT | 80 (25.7%) | 52 (23.9%) | 28 (30.1%) | ||
| CCRT+AC | 88(28.3%) | 65(29.8%) | 23 (28.0%) | ||
| Progression | 88(28.3%) | 62(28.4%) | 26 (28.0%) | 0.931 | |
| Follow-up time | 75.23±23.85 | 75.56±23.80 | 74.48±24.06 | 0.717 |
Abbreviations: LA-NPC, locoregionally advanced nasopharyngeal carcinoma; CCRT, concurrent chemoradiotherapy; IC, induction chemotherapy; AC, adjuvant chemotherapy.
Figure 1Framework of the study (A) Regions of interest (ROI). (B) Three types of features. (C) Feature selection by T-test and Lasso-logistic regression. (D) Establishment and validation of radiomics signature. (E) Establishment and validation of Nomogram.
Figure 2LASSO-logistic regression analysis for selection of radiomics features and the distribution of radiomics signature (A) The tuning parameters (λ) in Lasso-Logistic regression were selected by 10-fold cross-validation. When log(λ) is equal to −3.87, the AUC reaches its maximum value. (B) LASSO coefficient profiles of 527 radiomics features. 20 features with non-zero coefficients are selected at the optimal λ. Rad-score distribution of (C) patients in the training cohort and (D) patients in the validation cohort. Red bars show scores for patients were progression-free; green bars show scores for patients who experienced tumor progression or death by any cause.
Coefficient Profiles, Category and Filters of the 20 Radiomics Features Selected by LASSO-Logistic
| Radiomics Features | Coefficients | Category | Filters |
|---|---|---|---|
| LLL_firstorder_Median | 0.680 | Firstorder | Wavelet |
| 1_mm_3D_glszm_LargeAreaHighGrayLevelEmphasis | 0.534 | Textural | Log_sigma |
| Glrlm_GrayLevelNonUniformity | 0.342 | Textural | Gradien |
| HHH_ngtdm_Busyness | 0.323 | Textural | Wavelet |
| Glrlm_HighGrayLevelRunEmphasis | 0.225 | Textural | Original |
| HLH_glszm_LargeAreaHighGrayLevelEmphasis | 0.164 | Textural | Wavelet |
| HLL_gldm_SmallDependenceLowGrayLevelEmphasis | 0.148 | Textural | Wavelet |
| LLL_firstorder_TotalEnergy | 0.115 | Firstorder | Wavelet |
| Firstorder_Skewness | 0.084 | Firstorder | Exponential |
| LHL_ngtdm_Busyness | 0.076 | Textural | Wavelet |
| Glrlm_LongRunHighGrayLevelEmphasis | 0.065 | Textural | Squareroot |
| LLH_glcm_Autocorrelation | 0.033 | Textural | Wavelet |
| Glszm_HighGrayLevelZoneEmphasis | 0.033 | Textural | Original |
| Firstorder_TotalEnergy | 0.021 | Textural | Square |
| Gradient_ngtdm_Busyness | 3.00E-04 | Textural | Gradient |
| Glcm_Autocorrelation | 8.46E-05 | Textural | Original |
| HLL_glrlm_LongRunHighGrayLevelEmphasis | −0.007 | Textural | Wavelet |
| Glszm_SizeZoneNonUniformityNormalized | −0.021 | Textural | Exponential |
| HLH_gldm_DependenceNonUniformityNormalized | −0.101 | Textural | Wavelet |
| HLH_firstorder_Mean | −0.200 | Firstorder | Wavelet |
Figure 4Validation of Nomograms. The ROC curves of three models for (A) The training cohort and (B) the validation cohort. The Calibration curves of radiomics nomogram for (C) the training cohort and (D) the validation cohort. The Calibration curves are close to the standard curves, suggesting that the model has high accuracy in both cohorts. Decision curve analysis (DCA) for the radiomics nomogram and clinical nomogram of (E) the training cohort and (F) the validation cohort. The DCA indicates that radiomics nomogram provide more net benefit than the clinical nomogram and TNM staging model with threshold probability in both cohorts.
Performance of Radiomics Nomogram, Clinical Nomogram and TNM Staging System
| Cohort | Model | AUC | Sensitivity | Specificity | Accuracy |
|---|---|---|---|---|---|
| Training | Radiomics signature | 0.897 | 0.903 | 0.724 | 0.755 |
| Radiomics nomogram | 0.925 | 0.871 | 0.859 | 0.711 | |
| Clinical nomogram | 0.800 | 0.919 | 0.583 | 0.467 | |
| TNM staging system | 0.735 | 0.694 | 0.705 | 0.483 | |
| Validation | Radiomics signature | 0.856 | 0.846 | 0.731 | 0.763 |
| Radiomics nomogram | 0.873 | 0.962 | 0.657 | 0.742 | |
| Clinical nomogram | 0.729 | 0.654 | 0.672 | 0.667 | |
| TNM staging system | 0.689 | 1.000 | 0.269 | 0.473 |
Figure 3Establishment of Nomograms. (A) Radiomics nomogram, (B) Clinical nomogram and (C)TNM staging model.
Figure 5Kaplan–Meier analysis for (A) All patients, (B) Training cohort and (C) Validation cohort.