| Literature DB >> 34511722 |
Jianbing Hu1, Guoyuan Qi2, Xinchen Yu2, Lin Xu1.
Abstract
SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) has been causing an outbreak of a new type of pneumonia globally, and repeated outbreaks have already appeared. Among the studies on the spread of the COVID-19, few studies have investigated the repeated outbreaks in stages, and the quantitative condition of a controllable spread has not been revealed. In this paper, a brief compartmental model is developed. The effective reproduction number (ERN) of the model is interpreted by the ratio of net newly infectious individuals to net isolation infections to assess the controllability of the spread of COVID-19. It is found that the value of the ERN at the inflection point of the pandemic is equal to one. The effectiveness of the quarantine, even the treatment, is parametrized in various stages with Gompertz functions to increase modeling accuracy. The impacts of the vaccinations are discussed by adding a vaccinated compartment. The results show that the sufficient vaccinations can make the inflection point appear early and significantly reduce subsequent increases in newly confirmed cases. The analysis of the ERNs of COVID-19 in the United States, Spain, France, and Peru confirms that the condition of a repeated outbreak is to relax or lift the interventions related to isolation and quarantine interventions to a level where the ERN is greater than one.Entities:
Keywords: COVID-19; Controllability; Effective reproduction number; Repeated outbreaks; Staged assessment
Year: 2021 PMID: 34511722 PMCID: PMC8419392 DOI: 10.1007/s11071-021-06568-z
Source DB: PubMed Journal: Nonlinear Dyn ISSN: 0924-090X Impact factor: 5.741
Fig. 1Propagation path of COVID-19
Description and value range of model parameters
| Parameter | Description | Value range | Unit | Reference |
|---|---|---|---|---|
| Population size | – | – | [ | |
| Transmission rate | (0, 1) | day−1 | Estimated | |
| Diagnosis rate | (0, 1) | day−1 | Estimated | |
| Healing rate | (0, 1) | day−1 | Estimated | |
| Fatality rate | (0, 1) | day−1 | Estimated |
Fig. 2Estimation functions, a curves of Gompertz functions, b curves of time derivate of Gompertz functions
Fig. 3Newly confirmed cases and ERN with varying and fixed , a evolution of the newly confirmed cases, b evolution of the ERN
Date interval and description of the development stages of COVID-19 in Italy
| Stage | Date interval | Description | Outbreak |
|---|---|---|---|
| S1 | 02/22/2020–03/09/2020 | Early period of the first outbreak | First outbreak |
| S2 | 03/10/2020–05/03/2020 | Period of the first lockdown | |
| S3 | 05/04/2020–05/17/2020 | Period of the relaxation of the first lockdown | |
| S4 | 05/18/2020–06/22/2020 | Period of the further relaxation of the first lockdown | |
| S5 | 06/23/2020–07/21/2020 | Transition period from the first outbreak to the second outbreak | - |
| S6 | 07/22/2020–10/06/2020 | Initial period of the second outbreak | Second outbreak |
| S7 | 10/07/2020–10/28/2020 | Sharp growth period of the second outbreak | |
| S8 | 10/29/2020–12/17/2020 | Stabilization period of the second outbreak | |
| S9 | 12/18/2020–02/15/2021 | Transition period from the scond outbreak to the third outbreak | - |
| S10 | 02/16/2021–03/31/2021 | Period of the third outbreak | Third outbreak |
Fig. 4Fitting results of cumulative confirmed, treated, healed, and fatal cases, a black dotted curves represent the fitted results of the reported cumulative confirmed cases and treated cases filled with orange and green stem lines, respectively, b black dotted curves represent the fitted result of the reported healed cases and fatal cases filled with blue and purple stem lines, respectively
Determination coefficients and root mean squared errors of various compartments
| Compartment | RMSE | Reference | |
|---|---|---|---|
| 0.9998 | 14,913.7687 | Estimated | |
| 0.9978 | 12,196.0006 | Estimated | |
| 0.9999 | 8421.3142 | Estimated | |
| 0.9999 | 307.8454 | Estimated |
Model parameters at various stages
| Stage | Parameter | Reference | |||
|---|---|---|---|---|---|
| S1 | 0.30 | Estimated | |||
| S2 | 0.17 | Estimated | |||
| S3 | 0.10 | Estimated | |||
| S4 | 0.075 | Estimated | |||
| S5 | 0.11 | Estimated | |||
| S6 | 0.26 | Estimated | |||
| S7 | 0.39 | Estimated | |||
| S8 | 0.37 | Estimated | |||
| S9 | 0.30 | Estimated | |||
| S10 | 0.29 | Estimated | |||
Fig. 5Prediction of infectious individuals and newly confirmed cases without lockdown and the evolution of the ERN with newly confirmed cases of the COVID-19 in Italy, a infectious individuals and newly confirmed cases without lockdown, b evolution of the ERN with newly confirmed cases of the COVID-19 in Italy
Fig. 6Complete spread evolution of COVID-19 created by model (1) in Italy from February 22, 2020 to March 31, 2021
Fig. 7Impacts of the daily vaccinated cases on newly confirmed cases and ERN, a evolution of the newly confirmed cases varying from 300,000 to 420,000, b evolution of the ERN varying from 300,000 to 420,000
Fig. 8Illustration of repeated outbreaks in the United States, Spain, France, and Peru colored with ERN, a the change in ERN with reported newly confirmed cases in the United States and Spain, b the change in ERN with reported newly confirmed cases in the France and Peru