| Literature DB >> 34499117 |
Steven Grudman1, J Eduardo Fajardo1, Andras Fiser1.
Abstract
SUMMARY: The Interface Contact definition with Adaptable Atom Types (INTERCAAT) was developed to determine the atomic interactions between molecules that form a known three dimensional structure. First, INTERCAAT creates a Voronoi tessellation where each atom acts as a seed. Interactions are defined by atoms that share a hyperplane and whose distance is less than the sum of each atoms' Van der Waals radii plus the diameter of a solvent molecule. Interacting atoms are then classified and interactions are filtered based on compatibility. INTERCAAT implements an adaptive atom classification method; therefore, it can explore interfaces between a variety macromolecules. AVAILABILITY: Source code is freely available at (https://gitlab.com/fiserlab.org/intercaat). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.Entities:
Year: 2021 PMID: 34499117 PMCID: PMC8722752 DOI: 10.1093/bioinformatics/btab596
Source DB: PubMed Journal: Bioinformatics ISSN: 1367-4803 Impact factor: 6.931