Literature DB >> 34496933

Minhee Analysis Package: an integrated software package for detection and management of spontaneous synaptic events.

Yong Gyu Kim1,2,3, Jae Jin Shin1,4, Sang Jeong Kim5,6,7.   

Abstract

To understand the information encoded in a connection between the neurons, postsynaptic current (PSC) has been widely measured as a primary index of synaptic strength in the field of neurophysiology. Although several automatic detection methods for PSCs have been proposed to simplify a workflow in the analysis, repetitive steps such as quantification and management of PSC data should be still performed with much effort. Here, we present Minhee Analysis Package, an integrated standalone software package that is capable of detecting, sorting, and quantifying PSC data. First, we developed a stepwise exploratory algorithm to detect PSC and validated our detection algorithm using the simulated and experimental data. We also described all the features and examples of the package so that users can use and follow them properly. In conclusion, our software package is expected to improve the convenience and efficiency of neurophysiologists to analyze PSC data by simplifying the workflow from detection to quantification. Minhee Analysis Package is freely available to download from http://www.github.com/parkgilbong/Minhee_Analysis_Pack .
© 2021. The Author(s).

Entities:  

Keywords:  Data analysis software; Data management; Electrophysiology; Event detection; Postsynaptic current

Mesh:

Year:  2021        PMID: 34496933      PMCID: PMC8425072          DOI: 10.1186/s13041-021-00847-x

Source DB:  PubMed          Journal:  Mol Brain        ISSN: 1756-6606            Impact factor:   4.041


  18 in total

1.  A deconvolution-based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo.

Authors:  Alejandro Javier Pernía-Andrade; Sarit Pati Goswami; Yvonne Stickler; Ulrich Fröbe; Alois Schlögl; Peter Jonas
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

2.  Bayesian methods for event analysis of intracellular currents.

Authors:  Josh Merel; Ben Shababo; Alex Naka; Hillel Adesnik; Liam Paninski
Journal:  J Neurosci Methods       Date:  2016-05-18       Impact factor: 2.390

3.  STIM1 Regulates Somatic Ca2+ Signals and Intrinsic Firing Properties of Cerebellar Purkinje Neurons.

Authors:  Changhyeon Ryu; Dong Cheol Jang; Dayoon Jung; Yong Gyu Kim; Hyun Geun Shim; Hyun-Hee Ryu; Yong-Seok Lee; David J Linden; Paul F Worley; Sang Jeong Kim
Journal:  J Neurosci       Date:  2017-08-11       Impact factor: 6.167

4.  Automatic detection of spontaneous synaptic responses in central neurons.

Authors:  N Ankri; P Legendre; D S Faber; H Korn
Journal:  J Neurosci Methods       Date:  1994-04       Impact factor: 2.390

5.  A Missense Variant at the Nrxn3 Locus Enhances Empathy Fear in the Mouse.

Authors:  Sehoon Keum; Arie Kim; Jae Jin Shin; Jong-Hyun Kim; Joomin Park; Hee-Sup Shin
Journal:  Neuron       Date:  2018-04-19       Impact factor: 17.173

6.  Patch-clamp analysis of spontaneous synaptic currents in supraoptic neuroendocrine cells of the rat hypothalamus.

Authors:  J P Wuarin; F E Dudek
Journal:  J Neurosci       Date:  1993-06       Impact factor: 6.167

7.  Excitatory neuronal CHD8 in the regulation of neocortical development and sensory-motor behaviors.

Authors:  Hanseul Kweon; Won Beom Jung; Geun Ho Im; Jia Ryoo; Joon-Hyuk Lee; Hogyeong Do; Yeonsoo Choi; You-Hyang Song; Hwajin Jung; Haram Park; Lily R Qiu; Jacob Ellegood; Hyun-Ji Shim; Esther Yang; Hyun Kim; Jason P Lerch; Seung-Hee Lee; Won-Suk Chung; Daesoo Kim; Seong-Gi Kim; Eunjoon Kim
Journal:  Cell Rep       Date:  2021-02-23       Impact factor: 9.423

8.  SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function.

Authors:  Mihyun Bae; Junyeop Daniel Roh; Youjoung Kim; Seong Soon Kim; Hye Min Han; Esther Yang; Hyojin Kang; Suho Lee; Jin Yong Kim; Ryeonghwa Kang; Hwajin Jung; Taesun Yoo; Hyosang Kim; Doyoun Kim; Heejeong Oh; Sungwook Han; Dayeon Kim; Jinju Han; Yong Chul Bae; Hyun Kim; Sunjoo Ahn; Andrew M Chan; Daeyoup Lee; Jin Woo Kim; Eunjoon Kim
Journal:  EMBO Mol Med       Date:  2021-01-11       Impact factor: 12.137

9.  Stimfit: quantifying electrophysiological data with Python.

Authors:  Segundo J Guzman; Alois Schlögl; Christoph Schmidt-Hieber
Journal:  Front Neuroinform       Date:  2014-02-21       Impact factor: 4.081

10.  Prefrontal somatostatin interneurons encode fear memory.

Authors:  Kirstie A Cummings; Roger L Clem
Journal:  Nat Neurosci       Date:  2019-12-16       Impact factor: 24.884

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