Literature DB >> 34494289

Mixed-solvent molecular dynamics simulation-based discovery of a putative allosteric site on regulator of G protein signaling 4.

Wallace K B Chan1, Debarati DasGupta2, Heather A Carlson2, John R Traynor1,2.   

Abstract

Regulator of G protein signaling 4 (RGS4) is an intracellular protein that binds to the Gα subunit ofheterotrimeric G proteins and aids in terminating G protein coupled receptor signaling. RGS4 has been implicated in pain, schizophrenia, and the control of cardiac contractility. Inhibitors of RGS4 have been developed but bind covalently to cysteine residues on the protein. Therefore, we sought to identify alternative druggable sites on RGS4 using mixed-solvent molecular dynamics simulations, which employ low concentrations of organic probes to identify druggable hotspots on the protein. Pseudo-ligands were placed in consensus hotspots, and perturbation with normal mode analysis led to the identification and characterization of a putative allosteric site, which would be invaluable for structure-based drug design of non-covalent, small molecule inhibitors. Future studies on the mechanism of this allostery will aid in the development of novel therapeutics targeting RGS4.
© 2021 Wiley Periodicals LLC.

Entities:  

Keywords:  allosteric site prediction; computational solvent mapping; regulator of G protein signaling

Mesh:

Substances:

Year:  2021        PMID: 34494289      PMCID: PMC9027666          DOI: 10.1002/jcc.26747

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.672


  43 in total

Review 1.  Regulator of G protein signaling proteins: novel multifunctional drug targets.

Authors:  H Zhong; R R Neubig
Journal:  J Pharmacol Exp Ther       Date:  2001-06       Impact factor: 4.030

2.  RGS4 is required for dopaminergic control of striatal LTD and susceptibility to parkinsonian motor deficits.

Authors:  Talia N Lerner; Anatol C Kreitzer
Journal:  Neuron       Date:  2012-01-26       Impact factor: 17.173

Review 3.  Coarse-grained normal mode analysis in structural biology.

Authors:  Ivet Bahar; A J Rader
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

4.  Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis.

Authors:  Xin-Qiu Yao; Lars Skjærven; Barry J Grant
Journal:  J Phys Chem B       Date:  2016-04-20       Impact factor: 2.991

5.  Structure of RGS4 bound to AlF4--activated G(i alpha1): stabilization of the transition state for GTP hydrolysis.

Authors:  J J Tesmer; D M Berman; A G Gilman; S R Sprang
Journal:  Cell       Date:  1997-04-18       Impact factor: 41.582

6.  NMR structure of free RGS4 reveals an induced conformational change upon binding Galpha.

Authors:  F J Moy; P K Chanda; M I Cockett; W Edris; P G Jones; K Mason; S Semus; R Powers
Journal:  Biochemistry       Date:  2000-06-20       Impact factor: 3.162

Review 7.  Making the case for a candidate vulnerability gene in schizophrenia: Convergent evidence for regulator of G-protein signaling 4 (RGS4).

Authors:  Pat Levitt; Philip Ebert; Karoly Mirnics; Vishwajit L Nimgaonkar; David A Lewis
Journal:  Biol Psychiatry       Date:  2006-07-24       Impact factor: 13.382

8.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

9.  LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation.

Authors:  Bingding Huang; Michael Schroeder
Journal:  BMC Struct Biol       Date:  2006-09-24

10.  Integrating protein structural dynamics and evolutionary analysis with Bio3D.

Authors:  Lars Skjærven; Xin-Qiu Yao; Guido Scarabelli; Barry J Grant
Journal:  BMC Bioinformatics       Date:  2014-12-10       Impact factor: 3.169

View more
  1 in total

1.  Application of Site-Identification by Ligand Competitive Saturation in Computer-Aided Drug Design.

Authors:  Himanshu Goel; Anthony Hazel; Wenbo Yu; Sunhwan Jo; Alexander D MacKerell
Journal:  New J Chem       Date:  2021-11-29       Impact factor: 3.591

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.