Literature DB >> 34489601

Integrated analysis of plasma and single immune cells uncovers metabolic changes in individuals with COVID-19.

Jihoon W Lee1, Yapeng Su2,3,4, Priyanka Baloni5, Daniel Chen5, Ana Jimena Pavlovitch-Bedzyk6, Dan Yuan5, Venkata R Duvvuri5, Rachel H Ng5, Jongchan Choi5, Jingyi Xie5, Rongyu Zhang5, Kim Murray5, Sergey Kornilov5, Brett Smith5, Andrew T Magis5, Dave S B Hoon7, Jennifer J Hadlock5, Jason D Goldman8,9,10, Nathan D Price5,11, Raphael Gottardo12,13,14, Mark M Davis6,15,16, Leroy Hood5,9, Philip D Greenberg17,18, James R Heath19,20.   

Abstract

A better understanding of the metabolic alterations in immune cells during severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection may elucidate the wide diversity of clinical symptoms experienced by individuals with coronavirus disease 2019 (COVID-19). Here, we report the metabolic changes associated with the peripheral immune response of 198 individuals with COVID-19 through an integrated analysis of plasma metabolite and protein levels as well as single-cell multiomics analyses from serial blood draws collected during the first week after clinical diagnosis. We document the emergence of rare but metabolically dominant T cell subpopulations and find that increasing disease severity correlates with a bifurcation of monocytes into two metabolically distinct subsets. This integrated analysis reveals a robust interplay between plasma metabolites and cell-type-specific metabolic reprogramming networks that is associated with disease severity and could predict survival.
© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2021        PMID: 34489601      PMCID: PMC9206886          DOI: 10.1038/s41587-021-01020-4

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   68.164


  47 in total

1.  iMAT: an integrative metabolic analysis tool.

Authors:  Hadas Zur; Eytan Ruppin; Tomer Shlomi
Journal:  Bioinformatics       Date:  2010-11-15       Impact factor: 6.937

2.  Identifying specificity groups in the T cell receptor repertoire.

Authors:  Jacob Glanville; Huang Huang; Allison Nau; Olivia Hatton; Lisa E Wagar; Florian Rubelt; Xuhuai Ji; Arnold Han; Sheri M Krams; Christina Pettus; Nikhil Haas; Cecilia S Lindestam Arlehamn; Alessandro Sette; Scott D Boyd; Thomas J Scriba; Olivia M Martinez; Mark M Davis
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

Review 3.  The spectrum of T cell metabolism in health and disease.

Authors:  Glenn R Bantug; Lorenzo Galluzzi; Guido Kroemer; Christoph Hess
Journal:  Nat Rev Immunol       Date:  2017-09-25       Impact factor: 53.106

Review 4.  Metabolic control of B cell immune responses.

Authors:  Julia Jellusova
Journal:  Curr Opin Immunol       Date:  2019-12-01       Impact factor: 7.486

Review 5.  Metabolic regulation of immune responses.

Authors:  Kirthana Ganeshan; Ajay Chawla
Journal:  Annu Rev Immunol       Date:  2014       Impact factor: 28.527

Review 6.  The Metabolic Signature of Macrophage Responses.

Authors:  Antonella Viola; Fabio Munari; Ricardo Sánchez-Rodríguez; Tommaso Scolaro; Alessandra Castegna
Journal:  Front Immunol       Date:  2019-07-03       Impact factor: 7.561

7.  An immune-cell signature of bacterial sepsis.

Authors:  Miguel Reyes; Michael R Filbin; Roby P Bhattacharyya; Kianna Billman; Thomas Eisenhaure; Deborah T Hung; Bruce D Levy; Rebecca M Baron; Paul C Blainey; Marcia B Goldberg; Nir Hacohen
Journal:  Nat Med       Date:  2020-02-17       Impact factor: 53.440

8.  Multi-omic single-cell snapshots reveal multiple independent trajectories to drug tolerance in a melanoma cell line.

Authors:  Yapeng Su; Melissa E Ko; Hanjun Cheng; Ronghui Zhu; Min Xue; Jessica Wang; Jihoon W Lee; Luke Frankiw; Alexander Xu; Stephanie Wong; Lidia Robert; Kaitlyn Takata; Dan Yuan; Yue Lu; Sui Huang; Antoni Ribas; Raphael Levine; Garry P Nolan; Wei Wei; Sylvia K Plevritis; Guideng Li; David Baltimore; James R Heath
Journal:  Nat Commun       Date:  2020-05-11       Impact factor: 14.919

Review 9.  A metabolic handbook for the COVID-19 pandemic.

Authors:  Janelle S Ayres
Journal:  Nat Metab       Date:  2020-06-30
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  12 in total

1.  Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine.

Authors:  Kevin J Kramer; Erin M Wilfong; Kelsey Voss; Sierra M Barone; Andrea R Shiakolas; Nagarajan Raju; Caroline E Roe; Naveenchandra Suryadevara; Lauren M Walker; Steven C Wall; Ariana Paulo; Samuel Schaefer; Debolanle Dahunsi; Camille S Westlake; James E Crowe; Robert H Carnahan; Jeffrey C Rathmell; Rachel H Bonami; Ivelin S Georgiev; Jonathan M Irish
Journal:  Nat Commun       Date:  2022-06-16       Impact factor: 17.694

Review 2.  The Endocrine Adipose Organ: A System Playing a Central Role in COVID-19.

Authors:  Francesca Cinti; Saverio Cinti
Journal:  Cells       Date:  2022-07-04       Impact factor: 7.666

Review 3.  Innate metabolic responses against viral infections.

Authors:  Clovis S Palmer
Journal:  Nat Metab       Date:  2022-10-20

4.  Mitochondrial phenotypes in purified human immune cell subtypes and cell mixtures.

Authors:  Shannon Rausser; Caroline Trumpff; Marlon A McGill; Alex Junker; Wei Wang; Siu-Hong Ho; Anika Mitchell; Kalpita R Karan; Catherine Monk; Suzanne C Segerstrom; Rebecca G Reed; Martin Picard
Journal:  Elife       Date:  2021-10-26       Impact factor: 8.140

5.  Differential Co-Expression Network Analysis Reveals Key Hub-High Traffic Genes as Potential Therapeutic Targets for COVID-19 Pandemic.

Authors:  Aliakbar Hasankhani; Abolfazl Bahrami; Negin Sheybani; Behzad Aria; Behzad Hemati; Farhang Fatehi; Hamid Ghaem Maghami Farahani; Ghazaleh Javanmard; Mahsa Rezaee; John P Kastelic; Herman W Barkema
Journal:  Front Immunol       Date:  2021-12-15       Impact factor: 7.561

6.  Development of Exhausted Memory Monocytes and Underlying Mechanisms.

Authors:  Kisha Pradhan; Ziyue Yi; Shuo Geng; Liwu Li
Journal:  Front Immunol       Date:  2021-10-28       Impact factor: 8.786

7.  A Genetic Bottleneck of Mitochondrial DNA During Human Lymphocyte Development.

Authors:  Zhongjie Tang; Zhaolian Lu; Baizhen Chen; Weixing Zhang; Howard Y Chang; Zheng Hu; Jin Xu
Journal:  Mol Biol Evol       Date:  2022-05-03       Impact factor: 8.800

8.  Plasma Oxylipins and Their Precursors Are Strongly Associated with COVID-19 Severity and with Immune Response Markers.

Authors:  Naama Karu; Alida Kindt; Lieke Lamont; Adriaan J van Gammeren; Anton A M Ermens; Amy C Harms; Lutzen Portengen; Roel C H Vermeulen; Willem A Dik; Anton W Langerak; Vincent H J van der Velden; Thomas Hankemeier
Journal:  Metabolites       Date:  2022-07-04

Review 9.  Coronavirus disease 2019 (COVID-19) update: From metabolic reprogramming to immunometabolism.

Authors:  Mohammad Rudiansyah; Saade Abdalkareem Jasim; Zeinab Gol Mohammad Pour; Sara Sohrabi Athar; Ali Salimi Jeda; Rumi Iqbal Doewes; Abduladheem Turki Jalil; D O Bokov; Yasser Fakri Mustafa; Mina Noroozbeygi; Sajad Karampoor; Rasoul Mirzaei
Journal:  J Med Virol       Date:  2022-06-20       Impact factor: 20.693

10.  Metabolomics analysis identifies glutamic acid and cystine imbalances in COVID-19 patients without comorbid conditions. Implications on redox homeostasis and COVID-19 pathophysiology.

Authors:  José C Páez-Franco; José L Maravillas-Montero; Nancy R Mejía-Domínguez; Jiram Torres-Ruiz; Karla M Tamez-Torres; Alfredo Pérez-Fragoso; Juan Manuel Germán-Acacio; Alfredo Ponce-de-León; Diana Gómez-Martín; Alfredo Ulloa-Aguirre
Journal:  PLoS One       Date:  2022-09-20       Impact factor: 3.752

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