Literature DB >> 34487362

A re-analysis of the data in Sharkey et al.'s (2021) minimalist revision reveals that BINs do not deserve names, but BOLD Systems needs a stronger commitment to open science.

Rudolf Meier1,2, Bonnie B Blaimer2, Eliana Buenaventura2, Emily Hartop2, Thomas von Rintelen2, Amrita Srivathsan1, Darren Yeo1.   

Abstract

Halting biodiversity decline is one of the most critical challenges for humanity, but monitoring biodiversity is hampered by taxonomic impediments. One impediment is the large number of undescribed species (here called "dark taxon impediment") whereas another is caused by the large number of superficial species descriptions, that can only be resolved by consulting type specimens ("superficial description impediment"). Recently, Sharkey et al. (2021) proposed to address the dark taxon impediment for Costa Rican braconid wasps by describing 403 species based on COI barcode clusters ("BINs") computed by BOLD Systems. More than 99% of the BINs (387 of 390) were converted into species by assigning binominal names (e.g. BIN "BOLD:ACM9419" becomes Bracon federicomatarritai) and adding a minimal diagnosis (consisting only of a consensus barcode for most species). We here show that many of Sharkey et al.'s species are unstable when the underlying data are analyzed using different species delimitation algorithms. Add the insufficiently informative diagnoses, and many of these species will become the next "superficial description impediment" for braconid taxonomy because they will have to be tested and redescribed after obtaining sufficient evidence for confidently delimiting species. We furthermore show that Sharkey et al.'s approach of using consensus barcodes as diagnoses is not functional because it cannot be applied consistently. Lastly, we reiterate that COI alone is not suitable for delimiting and describing species, and voice concerns over Sharkey et al.'s uncritical use of BINs because they are calculated by a proprietary algorithm (RESL) that uses a mixture of public and private data. We urge authors, reviewers and editors to maintain high standards in taxonomy by only publishing new species that are rigorously delimited with open-access tools and supported by publicly available evidence.
© 2021 The Authors. Cladistics published by John Wiley & Sons Ltd on behalf of Willi Hennig Society.

Entities:  

Year:  2021        PMID: 34487362     DOI: 10.1111/cla.12489

Source DB:  PubMed          Journal:  Cladistics        ISSN: 0748-3007            Impact factor:   5.254


  12 in total

1.  Revision of Neotropical Scythrididae moths and descriptions of 22 new species from Argentina, Chile, and Peru (Lepidoptera, Gelechioidea).

Authors:  Kari Nupponen; Pasi Sihvonen
Journal:  Zookeys       Date:  2022-02-22       Impact factor: 1.546

2.  Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa.

Authors:  Emily Hartop; Amrita Srivathsan; Fredrik Ronquist; Rudolf Meier
Journal:  Syst Biol       Date:  2022-10-12       Impact factor: 9.160

Review 3.  Sizing the Knowledge Gap in Taxonomy: The Last Dozen Years of Aphidiinae Research.

Authors:  Andjeljko Petrović
Journal:  Insects       Date:  2022-02-05       Impact factor: 2.769

4.  Multiple species delimitation approaches with COI barcodes poorly fit each other and morphospecies - An integrative taxonomy case of Sri Lankan Sericini chafers (Coleoptera: Scarabaeidae).

Authors:  Uda Gedara Sasanka Lakmali Ranasinghe; Jonas Eberle; Jana Thormann; Claudia Bohacz; Suresh P Benjamin; Dirk Ahrens
Journal:  Ecol Evol       Date:  2022-05-19       Impact factor: 3.167

5.  Species boundaries in the messy middle-A genome-scale validation of species delimitation in a recently diverged lineage of coastal fog desert lichen fungi.

Authors:  Jesse Jorna; Jackson B Linde; Peter C Searle; Abigail C Jackson; Mary-Elise Nielsen; Madeleine S Nate; Natalie A Saxton; Felix Grewe; María de Los Angeles Herrera-Campos; Richard W Spjut; Huini Wu; Brian Ho; H Thorsten Lumbsch; Steven D Leavitt
Journal:  Ecol Evol       Date:  2021-12-19       Impact factor: 2.912

Review 6.  Current State of DNA Barcoding of Sciaroidea (Diptera)-Highlighting the Need to Build the Reference Library.

Authors:  Jostein Kjærandsen
Journal:  Insects       Date:  2022-01-29       Impact factor: 2.769

7.  Turbo taxonomy approaches: lessons from the past and recommendations for the future based on the experience with Braconidae (Hymenoptera) parasitoid wasps.

Authors:  Jose L Fernandez-Triana
Journal:  Zookeys       Date:  2022-02-25       Impact factor: 1.546

8.  DNA barcoding for biodiversity assessment: Croatian stoneflies (Insecta: Plecoptera).

Authors:  Dora Hlebec; Ignac Sivec; Martina Podnar; Mladen Kučinić
Journal:  PeerJ       Date:  2022-04-20       Impact factor: 3.061

9.  ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone.

Authors:  Amrita Srivathsan; Leshon Lee; Kazutaka Katoh; Emily Hartop; Sujatha Narayanan Kutty; Johnathan Wong; Darren Yeo; Rudolf Meier
Journal:  BMC Biol       Date:  2021-09-29       Impact factor: 7.431

10.  Mangroves are an overlooked hotspot of insect diversity despite low plant diversity.

Authors:  Darren Yeo; Amrita Srivathsan; Jayanthi Puniamoorthy; Foo Maosheng; Patrick Grootaert; Lena Chan; Benoit Guénard; Claas Damken; Rodzay A Wahab; Ang Yuchen; Rudolf Meier
Journal:  BMC Biol       Date:  2021-09-14       Impact factor: 7.431

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