| Literature DB >> 34482101 |
Katarzyna Jabłońska1, Samuel Aballéa2, Mondher Toumi3.
Abstract
OBJECTIVES: This study aimed at estimating the real-life impact of vaccination on COVID-19 mortality, with adjustment for SARS-CoV-2 variants spread and other factors across Europe and Israel. STUDYEntities:
Keywords: B.1.1.7 variant; COVID-19 mortality; Mobility; SARS-CoV-2 variants; VOC; Vaccination
Mesh:
Substances:
Year: 2021 PMID: 34482101 PMCID: PMC8413007 DOI: 10.1016/j.puhe.2021.07.037
Source DB: PubMed Journal: Public Health ISSN: 0033-3506 Impact factor: 4.984
Descriptive statistics of outcomes and covariates across 32 countries (January 2020–April 2021).
| Variable | N | Mean | Standard deviation | Median | Lower quartile | Upper quartile | Minimum | Maximum |
|---|---|---|---|---|---|---|---|---|
| Number of daily COVID-19 deaths | 13,229 | 3.355 | 4.618 | 1.159 | 0.206 | 4.933 | 0 | 28.770 |
| Proportion of vaccinated inhabitants | 13,181 | 0.018 | 0.058 | 0 | 0 | 0 | 0 | 0.616 |
| Proportion of 20A (EU2) variant | 13,106 | 0.349 | 0.250 | 0.313 | 0.154 | 0.509 | 0 | 1.000 |
| Proportion of 20E (EU1) variant | 12,754 | 0.090 | 0.159 | 0 | 0 | 0.114 | 0 | 0.741 |
| Proportion of 20I (B.1.1.7) variant | 13,099 | 0.124 | 0.256 | 0 | 0 | 0.065 | 0 | 1.000 |
| Max daily temperature | 13,008 | 15.597 | 9.347 | 15.833 | 8.750 | 22.389 | −17.111 | 43.111 |
| Mean daily wind speed | 13,010 | 6.227 | 3.353 | 5.600 | 3.700 | 8.100 | 0.100 | 25.800 |
| Arrivals at two biggest airports | 12,748 | 140.609 | 195.648 | 66.429 | 27.714 | 177.929 | 1.857 | 1780.143 |
| Mobility change from prepandemic | 12,918 | −0.217 | 0.170 | −0.201 | −0.322 | −0.091 | −0.792 | 0.199 |
| Proportion of inhabitants aged ≥65 years | 13,229 | 0.184 | 0.025 | 0.190 | 0.168 | 0.198 | 0.117 | 0.230 |
| Diabetes prevalence | 13,229 | 0.062 | 0.019 | 0.058 | 0.048 | 0.072 | 0.033 | 0.101 |
| Cardiovascular death rate | 13,229 | 2.037 | 1.124 | 1.535 | 1.148 | 2.783 | 0.861 | 5.398 |
Average mobility change from prepandemic level calculated across retail/recreation, transit stations, and groceries/pharmacies [0.01]. Descriptive statistics were calculated for 32 countries based on daily data between 29 January 2020 and 15 April 2021.
Fig. 1Mean SARS-CoV-2 variants proportions across countries, between January 2020 and April 2021. Mean proportions of variants were calculated based on daily data on variants proportions across observed strains used to form Nextstrain clades (variants), between 29 January 2020 and 15 April 2021.
Results of the non-linear Poisson mixed model of the number of daily COVID-19 deaths.
| Variable | Estimate | Standard error | |
|---|---|---|---|
| Intercept | 0.467 | 0.202 | 0.028 |
| Logarithm of the number of daily COVID-19 deaths 7 days before | 0.926 | 0.007 | <0.001 |
| Logarithm of the number of COVID-19 deaths 7 days before/14 days before | 0.158 | 0.015 | <0.001 |
| Proportion of 20A (EU2) variant | 0.012 | 0.036 | 0.746 |
| Proportion of 20E (EU1) variant | −0.032 | 0.046 | 0.501 |
| Proportion of 20I (B.1.1.7) variant | 0.059 | 0.033 | 0.084 |
| Max daily temperature | −0.005 | 0.001 | <0.001 |
| Mean daily wind speed | −0.002 | 0.002 | 0.351 |
| Arrivals at two biggest airports [in thousands] | 0.709 | 0.085 | <0.001 |
| Mobility change from prepandemic | 0.753 | 0.064 | <0.001 |
| Proportion of inhabitants aged ≥65 years | −1.238 | 0.930 | 0.193 |
| Diabetes prevalence | 0.544 | 1.293 | 0.677 |
| Cardiovascular death rate | 0.023 | 0.023 | 0.322 |
| Vaccination effectiveness | 0.720 | 0.132 | <0.001 |
| 0.014 | 0.006 | 0.023 | |
| 0.036 | 0.023 | 0.126 |
AIC = 30,184.
Abbreviations: AIC = Akaike's information criterion; mln = million; RE = random effects.
Non-linear Poisson mixed model of the daily number of COVID-19 deaths per 1 mln inhabitants, with country-specific random effects on intercept and mobility. Daily data for 32 countries were included, from 29 January 2020 to 15 April 2021. Assumed time to symptoms onset is 7 days; assumed time between symptoms onset and death is 14 days.
Time-varying variable with a 7-days lag.
Time-varying variable with a 21-days lag.
Fixed variable.
Average mobility change from prepandemic level calculated across retail/recreation, transit stations, and groceries/pharmacies [0.01].
Results of the non-linear Poisson mixed model of the number of daily COVID-19 deaths with interactions between variants proportions and vaccination effectiveness.
| Variable | Estimate | Standard error | |
|---|---|---|---|
| Intercept | 0.409 | 0.204 | 0.054 |
| Logarithm of the number of daily COVID-19 deaths 7 days before | 0.926 | 0.007 | <0.001 |
| Logarithm of the number of COVID-19 deaths 7 days before/14 days before | 0.158 | 0.015 | <0.001 |
| Proportion of 20A (EU2) variant | 0.012 | 0.036 | 0.747 |
| Proportion of 20E (EU1) variant | −0.034 | 0.047 | 0.467 |
| Proportion of 20I (B.1.1.7) variant | 0.059 | 0.033 | 0.085 |
| Max daily temperature | −0.005 | 0.001 | <0.001 |
| Mean daily wind speed | −0.002 | 0.002 | 0.346 |
| Arrivals at two biggest airports [in thousands] | 0.703 | 0.085 | <0.001 |
| Mobility change from prepandemic | 0.753 | 0.064 | <0.001 |
| Proportion of inhabitants aged ≥65 years | −0.805 | 0.925 | 0.391 |
| Diabetes prevalence | 0.124 | 1.285 | 0.924 |
| Cardiovascular death rate | 0.025 | 0.023 | 0.278 |
| Vaccination effectiveness against 20I (B.1.1.7) | 0.697 | 0.201 | 0.002 |
| Vaccination effectiveness against variants other than 20I (B.1.1.7) | 0.778 | 0.379 | 0.049 |
| 0.013 | 0.006 | 0.025 | |
| 0.035 | 0.023 | 0.132 |
AIC = 30,186.
Abbreviations: AIC = Akaike's information criterion; mln = million; RE = random effects.
Non-linear Poisson mixed model of the daily number of COVID-19 deaths per 1 mln inhabitants, with country-specific random effects on intercept and mobility, including interactions between variants proportions and vaccination effectiveness. Daily data for 32 countries were included, from 29 January 2020 to 15 April 2021. Assumed time to symptoms onset is 7 days; assumed time between symptoms onset and death is 14 days.
Time-varying variable with a 7-days lag.
Time-varying variable with a 21-days lag.
Fixed variable.
Average mobility change from prepandemic level calculated across retail/recreation, transit stations, and groceries/pharmacies [0.01].
Fig. 2Estimates of the vaccination effectiveness against mortality – main analysis and sensitivity analyses results. Abbreviations: 95% CI = 95% Confidence Interval. Assumptions of the analyses: Main analysis: time to onset = 7 days, time between symptoms onset and death = 14 days. Sensitivity analysis 1: time to onset = 14 days, time between symptoms onset and death = 14 days. Sensitivity analysis 2: time to onset = 14 days, time between symptoms onset and death = 7 days. Sensitivity analysis 3: time to onset = 7 days, time between symptoms onset and death = 7 days.