Literature DB >> 34480688

ATP-binding cassette transporters expression profiling revealed its role in the development and regulating stress response in Solanum tuberosum.

Madiha Zaynab1, Zongkang Wang2, Athar Hussain3, Khalida Bahadar4, Mateen Sajid5, Yasir Sharif6, Muhammad Azam7, Kalsoom Sughra8, Muhammad Ammar Raza9, Khalid Ali Khan10,11,12, Shuangfei Li13.   

Abstract

The ATP-binding cassette (ABC) transporter gene family plays a vital role in substance transportation, including secondary metabolites, and phytohormones across membranous structures. It is still uncovered in potato (Solanum tuberosum), grown worldwide as a 3rd important food crop. The current study identified a total of 54 Stabc genes in potato genome. The accumulative phylogenetic tree of Stabc with arabidopsis, divided into eight groups (ABCA to ABCH). ABCG was the most prominent group covering 90% of Stabc genes, followed by ABCB group. The number and architecture of exon-intron varied from gene to gene. In addition, the presence of stress-responsive elements in the regulatory regions depicted their role in environmental stress. Furthermore, the tissue-specific and stress-specific expression profiling of Stabc genes and their validation through real-time-qPCR analysis revealed their role in development and stress. The presented results provided useful information for further functional analysis of Stabc genes and can also use as a reference study for other important crops.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Expression; Genome-wide; Phylogeny; RT-qPCR; Stabc; Stress

Mesh:

Substances:

Year:  2021        PMID: 34480688     DOI: 10.1007/s11033-021-06697-z

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.742


  31 in total

1.  ABCG15 encodes an ABC transporter protein, and is essential for post-meiotic anther and pollen exine development in rice.

Authors:  Peng Qin; Bin Tu; Yuping Wang; Luchang Deng; Teagen D Quilichini; Ting Li; Hui Wang; Bingtian Ma; Shigui Li
Journal:  Plant Cell Physiol       Date:  2012-12-05       Impact factor: 4.927

2.  ATP-binding cassette transporter G26 is required for male fertility and pollen exine formation in Arabidopsis.

Authors:  Teagen D Quilichini; Michael C Friedmann; A Lacey Samuels; Carl J Douglas
Journal:  Plant Physiol       Date:  2010-08-23       Impact factor: 8.340

3.  The Arabidopsis thaliana ABC protein superfamily, a complete inventory.

Authors:  R Sánchez-Fernández; T G Davies; J O Coleman; P A Rea
Journal:  J Biol Chem       Date:  2001-05-09       Impact factor: 5.157

4.  PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid.

Authors:  Joohyun Kang; Jae-Ung Hwang; Miyoung Lee; Yu-Young Kim; Sarah M Assmann; Enrico Martinoia; Youngsook Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

5.  Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin.

Authors:  Donghwi Ko; Joohyun Kang; Takatoshi Kiba; Jiyoung Park; Mikiko Kojima; Jihye Do; Kyung Yoon Kim; Mi Kwon; Anne Endler; Won-Yong Song; Enrico Martinoia; Hitoshi Sakakibara; Youngsook Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

6.  Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems.

Authors:  Olivier Garcia; Philippe Bouige; Cyrille Forestier; Elie Dassa
Journal:  J Mol Biol       Date:  2004-10-08       Impact factor: 5.469

Review 7.  The ABC transporter structure and mechanism: perspectives on recent research.

Authors:  P M Jones; A M George
Journal:  Cell Mol Life Sci       Date:  2004-03       Impact factor: 9.261

Review 8.  The role of ABCG-type ABC transporters in phytohormone transport.

Authors:  Lorenzo Borghi; Joohyun Kang; Donghwi Ko; Youngsook Lee; Enrico Martinoia
Journal:  Biochem Soc Trans       Date:  2015-10       Impact factor: 5.407

9.  Whole-transcriptome survey of the putative ATP-binding cassette (ABC) transporter family genes in the latex-producing laticifers of Hevea brasiliensis.

Authors:  Nie Zhiyi; Kang Guijuan; Li Yu; Dai Longjun; Zeng Rizhong
Journal:  PLoS One       Date:  2015-01-23       Impact factor: 3.240

10.  Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.

Authors:  Carlos Lopez-Ortiz; Sudip Kumar Dutta; Purushothaman Natarajan; Yadira Peña-Garcia; Venkata Abburi; Thangasamy Saminathan; Padma Nimmakayala; Umesh K Reddy
Journal:  PLoS One       Date:  2019-04-30       Impact factor: 3.240

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  2 in total

1.  Genome-Wide Identification and Expression Profiling of Germin-Like Proteins Reveal Their Role in Regulating Abiotic Stress Response in Potato.

Authors:  Madiha Zaynab; Jiaofeng Peng; Yasir Sharif; Mahpara Fatima; Mohammed Albaqami; Rashid Al-Yahyai; Ali Raza; Khalid Ali Khan; Saqer S Alotaibi; Ibrahim A Alaraidh; Hassan O Shaikhaldein; Shuangfei Li
Journal:  Front Plant Sci       Date:  2022-02-17       Impact factor: 5.753

2.  Genome-Wide Identification and Expression Profiling of DUF221 Gene Family Provides New Insights Into Abiotic Stress Responses in Potato.

Authors:  Madiha Zaynab; Jiaofeng Peng; Yasir Sharif; Mohammed Albaqami; Rashid Al-Yahyai; Mahpara Fatima; Muhammad Azhar Nadeem; Khalid Ali Khan; Saqer S Alotaibi; Ibrahim A Alaraidh; Hassan O Shaikhaldein; Shuangfei Li
Journal:  Front Plant Sci       Date:  2022-01-20       Impact factor: 5.753

  2 in total

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