Literature DB >> 34474016

UV Resonance Raman explores protein structural modification upon fibrillation and ligand interaction.

Maria Pachetti1, Francesco D'Amico2, Lorella Pascolo3, Stefania Pucciarelli4, Alessandro Gessini2, Pietro Parisse5, Lisa Vaccari6, Claudio Masciovecchio7.   

Abstract

Amyloids are proteinaceous deposits considered an underlying pathological hallmark of several degenerative diseases. The mechanism of amyloid formation and its inhibition still represent challenging issues, especially when protein structure cannot be investigated by classical biophysical techniques as for the intrinsically disordered proteins (IDPs). In this view, the need to find an alternative way for providing molecular and structural information regarding IDPs prompted us to set a novel, to our knowledge, approach focused on UV Resonance Raman (UVRR) spectroscopy. To test its applicability, we study the fibrillation of hen-egg white lysozyme (HEWL) and insulin as well as their interaction with resveratrol, employing also intrinsic fluorescence spectroscopy, Fourier transform infrared (FTIR) spectroscopy, and atomic force microscopy (AFM). The increasing of the β-sheet structure content at the end of protein fibrillation probed by FTIR occurs simultaneously with a major solvent exposure of tryptophan (Trp) and tyrosine (Tyr) residues of HEWL and insulin, respectively, as revealed by UVRR and intrinsic fluorescence spectroscopy. However, because the latter technique is successfully used when proteins naturally contain Trp residues, it shows poor performances in the case of insulin, and the information regarding its tertiary structure is exclusively provided by UVRR spectroscopy. The presence of an increased concentration of resveratrol induces mild changes in the secondary structure of both protein fibrils while remodeling HEWL fibril length and promoting the formation of amorphous aggregates in the case of insulin. Although the intrinsic fluorescence spectra of proteins are hidden by resveratrol signal, UVRR Trp and Tyr bands are resonantly enhanced, showing a good sensitivity to the presence of resveratrol and marking a modification in the noncovalent interactions in which they are involved. Our findings demonstrate that UVRR is successfully employed in the study of aggregation-prone proteins and of their interaction with ligands, especially in the case of Trp-lacking proteins.
Copyright © 2021 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 34474016      PMCID: PMC8553600          DOI: 10.1016/j.bpj.2021.08.032

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  101 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

2.  Antioxidant compounds have potent anti-fibrillogenic and fibril-destabilizing effects for alpha-synuclein fibrils in vitro.

Authors:  Kenjiro Ono; Masahito Yamada
Journal:  J Neurochem       Date:  2006-03-08       Impact factor: 5.372

3.  Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen-deuterium exchange kinetics.

Authors:  T Miura; H Takeuchi; I Harada
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

Review 4.  Quantitative studies of the structure of proteins in solution by Fourier-transform infrared spectroscopy.

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Journal:  Prog Biophys Mol Biol       Date:  1993       Impact factor: 3.667

Review 5.  UV resonance Raman investigations of peptide and protein structure and dynamics.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher; Joseph Handen; Igor K Lednev
Journal:  Chem Rev       Date:  2012-02-15       Impact factor: 60.622

6.  Studies of the structure of insulin fibrils by Fourier transform infrared (FTIR) spectroscopy and electron microscopy.

Authors:  L Nielsen; S Frokjaer; J F Carpenter; J Brange
Journal:  J Pharm Sci       Date:  2001-01       Impact factor: 3.534

7.  Characterization of oligomers during alpha-synuclein aggregation using intrinsic tryptophan fluorescence.

Authors:  Alexandra Dusa; Joanna Kaylor; Shauna Edridge; Nika Bodner; Dong-Pyo Hong; Anthony L Fink
Journal:  Biochemistry       Date:  2006-02-28       Impact factor: 3.162

8.  Controlling in Vitro Insulin Amyloidosis with Stable Peptide Conjugates: A Combined Experimental and Computational Study.

Authors:  Narendra Kumar Mishra; R N V Krishna Deepak; Ramasubbu Sankararamakrishnan; Sandeep Verma
Journal:  J Phys Chem B       Date:  2015-12-08       Impact factor: 2.991

9.  Anti-amyloidogenic properties of some phenolic compounds.

Authors:  Afsaneh Porzoor; Benjamin Alford; Helmut M Hügel; Danilla Grando; Joanne Caine; Ian Macreadie
Journal:  Biomolecules       Date:  2015-04-17

10.  Cryo-EM structure of alpha-synuclein fibrils.

Authors:  Ricardo Guerrero-Ferreira; Nicholas Mi Taylor; Daniel Mona; Philippe Ringler; Matthias E Lauer; Roland Riek; Markus Britschgi; Henning Stahlberg
Journal:  Elife       Date:  2018-07-03       Impact factor: 8.140

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  1 in total

1.  Strategies and Perspectives for UV Resonance Raman Applicability in Clinical Analyses of Human Sperm RNA.

Authors:  Maria Pachetti; Francesco D'Amico; Luisa Zupin; Stefania Luppi; Monica Martinelli; Sergio Crovella; Giuseppe Ricci; Lorella Pascolo
Journal:  Int J Mol Sci       Date:  2021-12-04       Impact factor: 5.923

  1 in total

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