Literature DB >> 34469192

Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas.

Chen Gao1,2, Xinhao Zhou1, Jun Xia1, Yantao Liang1,2, Yong Jiang1,2, Meiwen Wang1, Hongbing Shao1,2, Xiaochong Shi1, Cui Guo1,2, Hui He1,2, Hualong Wang1,2, Jianfeng He3, Denghui Hu4, Xiaoyu Wang1, Jinping Zhao5, Yu-Zhong Zhang6,7, Yeong Yik Sung2,8, Wen Jye Mok2,8, Li Lian Wong2,8, Andrew McMinn1,9, Curtis A Suttle10, Min Wang1,2,11.   

Abstract

Nordic Seas are the subarctic seas connecting the Arctic Ocean and North Atlantic Ocean with complex water masses, experiencing an abrupt climate change. Though knowledge of the marine virosphere has expanded rapidly, the diversity of viruses and their relationships with host cells and water masses in the Nordic Seas remain to be fully revealed. Here, we establish the Nordic Sea DNA virome (NSV) data set of 55,315 viral contigs including 1,478 unique viral populations from seven stations influenced by both the warm Atlantic and cold Arctic water masses. Caudovirales dominated in the seven NSVs, especially in the warm Atlantic waters. The major giant nucleocytoplasmic large DNA viruses (NCLDVs) contributed a significant proportion of the classified viral contigs in the NSVs (32.2%), especially in the cold Arctic waters (44.9%). The distribution patterns of Caudovirales and NCLDVs were a reflection of the community structure of their hosts in the corresponding water masses and currents. Latitude, pH, and flow speed were found to be key factors influencing the microbial communities and coinfluencing the variation of viral communities. Network analysis illustrated the tight coupling between the variation of viral communities and microbial communities in the Nordic Seas. This study suggests a probable linkage between viromes, host cells, and surface water masses from both the cool Arctic and warm Atlantic Oceans. IMPORTANCE This is a systematic study of Nordic Sea viromes using metagenomic analysis. The viral diversity, community structure, and their relationships with host cells and the complex water masses from both the cool Arctic and the warm Atlantic oceans were illustrated. The NCLDVs and Caudovirales are proposed as the viral characteristics of the cold Arctic and warm Atlantic waters, respectively. This study provides an important background for the viromes in the subarctic seas connecting the Arctic Ocean and North Atlantic Ocean and sheds light on their responses to abrupt climate change in the future.

Entities:  

Keywords:  DNA virome; Nordic Seas; metagenomics; microbial community; water masses and currents

Mesh:

Year:  2021        PMID: 34469192      PMCID: PMC8552889          DOI: 10.1128/AEM.01160-21

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  79 in total

1.  Genomic analysis of uncultured marine viral communities.

Authors:  Mya Breitbart; Peter Salamon; Bjarne Andresen; Joseph M Mahaffy; Anca M Segall; David Mead; Farooq Azam; Forest Rohwer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-16       Impact factor: 11.205

2.  Giant virus with a remarkable complement of genes infects marine zooplankton.

Authors:  Matthias G Fischer; Michael J Allen; William H Wilson; Curtis A Suttle
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

Review 3.  Prochlorococcus: advantages and limits of minimalism.

Authors:  Frédéric Partensky; Laurence Garczarek
Journal:  Ann Rev Mar Sci       Date:  2010

4.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Authors:  Weizhong Li; Adam Godzik
Journal:  Bioinformatics       Date:  2006-05-26       Impact factor: 6.937

5.  [Pithovirus sibericum: awakening of a giant virus of more than 30,000 years].

Authors:  Chantal Abergel; Jean-Michel Claverie
Journal:  Med Sci (Paris)       Date:  2014-03-31       Impact factor: 0.818

6.  Twelve previously unknown phage genera are ubiquitous in global oceans.

Authors:  Karin Holmfeldt; Natalie Solonenko; Manesh Shah; Kristen Corrier; Lasse Riemann; Nathan C Verberkmoes; Matthew B Sullivan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

7.  Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning.

Authors:  Grieg F Steward; Christina M Preston
Journal:  Virol J       Date:  2011-06-09       Impact factor: 4.099

8.  Evaluation of Tangential Flow Filtration for the Concentration and Separation of Bacteria and Viruses in Contrasting Marine Environments.

Authors:  Lanlan Cai; Yunlan Yang; Nianzhi Jiao; Rui Zhang
Journal:  PLoS One       Date:  2015-08-25       Impact factor: 3.240

9.  Effect of phytoplankton size diversity on primary productivity in the North Pacific: trait distributions under environmental variability.

Authors:  Bingzhang Chen; Sherwood Lan Smith; Kai W Wirtz
Journal:  Ecol Lett       Date:  2018-10-17       Impact factor: 9.492

10.  Giant virus diversity and host interactions through global metagenomics.

Authors:  Frederik Schulz; Simon Roux; David Paez-Espino; Sean Jungbluth; David A Walsh; Vincent J Denef; Katherine D McMahon; Konstantinos T Konstantinidis; Emiley A Eloe-Fadrosh; Nikos C Kyrpides; Tanja Woyke
Journal:  Nature       Date:  2020-01-22       Impact factor: 49.962

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  1 in total

1.  Distributions and relationships of virio- and picoplankton in the epi-, meso- and bathypelagic zones of the Amundsen Sea, West Antarctica during the austral summer.

Authors:  Meiaoxue Han; Guangfu Luo; Jianfeng He; Yantao Liang; Xuechao Chen; Gang Liu; Yue Su; Fuyue Ge; Hao Yu; Jun Zhao; Qiang Hao; Hongbing Shao; Yeong Yik Sung; Wen Jye Mok; Li Lian Wong; Andrew McMinn; Min Wang
Journal:  Front Microbiol       Date:  2022-07-27       Impact factor: 6.064

  1 in total

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