Literature DB >> 34469144

Combining Chemical Knowledge and Quantum Calculation for Interpreting Low-Energy Product Ion Spectra of Metabolite Adduct Ions: Sodiated Diterpene Diester Species as a Case Study.

Jean-Claude Tabet1,2, Yves Gimbert1,3, Annelaure Damont2, David Touboul4, François Fenaille2, Amina S Woods5,6.   

Abstract

We investigated the product ion spectra of [M + Na]+ from diterpene diester species and low molecular mass metabolites analyzed by electrospray ionization (ESI). Mainly, the formation of protonated salt structures was proposed to explain the observed neutral losses of carboxylic acids. It also facilitates understanding sodium retention on product ions or on neutral losses. In addition, the occurrence of consecutive carboxylic acid losses is rather unexpected under resonant excitation conditions. Quantum calculation demonstrated that the exothermic character of such neutral losses can represent a relevant explanation. There is no doubt that the formation and role of the protonated salt structures will be helpful for a better understanding and software-assisted interpretation of tandem mass spectra from small molecules, especially in the ever-growing metabolomics field.

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Year:  2021        PMID: 34469144      PMCID: PMC8903029          DOI: 10.1021/jasms.1c00154

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  17 in total

Review 1.  Fragmentation reactions using electrospray ionization mass spectrometry: an important tool for the structural elucidation and characterization of synthetic and natural products.

Authors:  Daniel P Demarque; Antonio E M Crotti; Ricardo Vessecchi; João L C Lopes; Norberto P Lopes
Journal:  Nat Prod Rep       Date:  2015-12-16       Impact factor: 13.423

Review 2.  High resolution mass spectrometry based techniques at the crossroads of metabolic pathways.

Authors:  Christophe Junot; François Fenaille; Benoit Colsch; François Bécher
Journal:  Mass Spectrom Rev       Date:  2013-11-28       Impact factor: 10.946

3.  Proposal for a chemically consistent way to annotate ions arising from the analysis of reference compounds under ESI conditions: A prerequisite to proper mass spectral database constitution in metabolomics.

Authors:  Annelaure Damont; Marie-Françoise Olivier; Anna Warnet; Bernard Lyan; Estelle Pujos-Guillot; Emilien L Jamin; Laurent Debrauwer; Stéphane Bernillon; Christophe Junot; Jean-Claude Tabet; François Fenaille
Journal:  J Mass Spectrom       Date:  2019-06       Impact factor: 1.982

Review 4.  Annotation: A Computational Solution for Streamlining Metabolomics Analysis.

Authors:  Xavier Domingo-Almenara; J Rafael Montenegro-Burke; H Paul Benton; Gary Siuzdak
Journal:  Anal Chem       Date:  2017-11-03       Impact factor: 6.986

5.  Reactivity of gaseous sodiated ions derived from benzene dicarboxylate salts toward residual water in the collision gas.

Authors:  Chang-Ching Chan; Frank U Axe; Mark Bolgar; Athula B Attygalle
Journal:  J Mass Spectrom       Date:  2010-10       Impact factor: 1.982

6.  Experimental evidence that electrospray-produced sodiated lysophosphatidyl ester structures exist essentially as protonated salts.

Authors:  Benoit Colsch; Annelaure Damont; Christophe Junot; François Fenaille; Jean-Claude Tabet
Journal:  Eur J Mass Spectrom (Chichester)       Date:  2019-03-25       Impact factor: 1.067

7.  Generation of gas-phase sodiated arenes such as [(Na3(C6H4)+] from benzene dicarboxylate salts.

Authors:  Athula B Attygalle; Chang-Ching Chan; Frank U Axe; Mark Bolgar
Journal:  J Mass Spectrom       Date:  2010-01       Impact factor: 1.982

8.  Enhanced MS/MS coverage for metabolite identification in LC-MS-based untargeted metabolomics by target-directed data dependent acquisition with time-staggered precursor ion list.

Authors:  Yang Wang; Ruibing Feng; Ruibing Wang; Fengqing Yang; Peng Li; Jian-Bo Wan
Journal:  Anal Chim Acta       Date:  2017-09-13       Impact factor: 6.558

9.  Reproducible molecular networking of untargeted mass spectrometry data using GNPS.

Authors:  Allegra T Aron; Emily C Gentry; Kerry L McPhail; Louis-Félix Nothias; Mélissa Nothias-Esposito; Amina Bouslimani; Daniel Petras; Julia M Gauglitz; Nicole Sikora; Fernando Vargas; Justin J J van der Hooft; Madeleine Ernst; Kyo Bin Kang; Christine M Aceves; Andrés Mauricio Caraballo-Rodríguez; Irina Koester; Kelly C Weldon; Samuel Bertrand; Catherine Roullier; Kunyang Sun; Richard M Tehan; Cristopher A Boya P; Martin H Christian; Marcelino Gutiérrez; Aldo Moreno Ulloa; Javier Andres Tejeda Mora; Randy Mojica-Flores; Johant Lakey-Beitia; Victor Vásquez-Chaves; Yilue Zhang; Angela I Calderón; Nicole Tayler; Robert A Keyzers; Fidele Tugizimana; Nombuso Ndlovu; Alexander A Aksenov; Alan K Jarmusch; Robin Schmid; Andrew W Truman; Nuno Bandeira; Mingxun Wang; Pieter C Dorrestein
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 17.021

Review 10.  Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics.

Authors:  Ivana Blaženović; Tobias Kind; Jian Ji; Oliver Fiehn
Journal:  Metabolites       Date:  2018-05-10
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  1 in total

1.  Identification of bacterial lipo-amino acids: origin of regenerated fatty acid carboxylate from dissociation of lipo-glutamate anion.

Authors:  Amandine Hueber; Yves Gimbert; Geoffrey Langevin; Jean-Marie Galano; Alexandre Guy; Thierry Durand; Nicolas Cenac; Justine Bertrand-Michel; Jean-Claude Tabet
Journal:  Amino Acids       Date:  2022-01-25       Impact factor: 3.520

  1 in total

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